Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25428 167 4e-36 seq5028 84.2 4e-11 >seq25428 Length=70394 Score = 167 bits (184), Expect = 4e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || ||||||||||||||||| | ||||||| ||||||| || | || ||||||| Sbjct 7736 CCTTTGCTGACGGGGCTGCCGTGGTAGGTCTGGTAGGGCCCCTGCTCCTCAGCCAGCTGG 7795 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || ||||| |||||||||||||||||||||||| | ||| | | || | Sbjct 7796 CAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATC-TGTTGGTTGAGCAGCTG 7854 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 |||| | ||| |||||||| || ||| | |||||| |||||||||| |||||||| Sbjct 7855 CGCCTGGGCGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCAC 7914 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||||||||||| | ||| |||| ||||||| Sbjct 7915 CCCGATGCCGATGGGGCGGTGGCGCTGGTTGGAG 7948 Score = 158 bits (174), Expect = 2e-33 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 13208 CCACCTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 13267 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| |||| ||||||||||||||||||||||||| ||||| Sbjct 13268 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCG 13327 Query 244824 CCCCGGTCTC 244833 ||| ||||| Sbjct 13328 TCCCCGTCTC 13337 Score = 147 bits (162), Expect = 4e-30 Identities = 120/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | |||||||||||| ||||||||||| || | ||||||||||| || ||||||| Sbjct 15445 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGC 15504 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | ||| ||||||| ||||| |||||||||| Sbjct 15505 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCCAGGGC 15564 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| |||| ||| ||||| Sbjct 15565 TCCAGGTAGATGGCGAAGGCCCCGGG 15590 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||| ||||| ||||||||||| ||||| ||||| ||||||| || ||||| | Sbjct 6701 CACCTGGAACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCAC 6760 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 || |||| ||||| ||||| |||||| || || |||||||| | |||||| || Sbjct 6761 CGATTCATTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAG 6820 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||||||| Sbjct 6821 GCTGTTCCTGACCCCGTGCCT 6841 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| || |||||||||||||||| ||||| | |||| || || ||||| | | || Sbjct 4210 GATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCCGCCATCTTCAGGAT 4269 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| |||| | || |||||| | | | Sbjct 4270 GGTCTTCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTC 4329 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 4330 CGGGATGTTCTG 4341 >seq5028 Length=21598 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || ||||| || ||||||||||| || || || || |||| || | Sbjct 4445 TGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCAGCCATATTTT 4504 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||||||| ||| | || ||||| || || || ||||| || ||||| || ||||| | Sbjct 4505 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAATGAACTTATTAGCAGAG 4564 Query 42826 ACGA 42829 | || Sbjct 4565 ATGA 4568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943998258136080