Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq25428 109 5e-19 >seq25428 Length=70394 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| || | ||| || || ||||||||||||||||||||||||||||| |||||| Sbjct 6838 CACGGGGTCAGGAACAGCCTCCTGGTGGCCCCCATGCCCACGGCCTCCACGGCTCAGATC 6779 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || || ||||| || ||| | || |||| |||| |||| | |||| | | |||||||| Sbjct 6778 CTGGGGAACAATGAATCGGTGGAGCCCTACACCAGCAACATCTACACCCGCCGGGTGCTG 6719 Query 95197 GCCGGGGAATTCC 95209 | ||||| |||| Sbjct 6718 TCGGGGGAGTTCC 6706 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 ||||| |||| || |||||||||||| ||| | | || |||||||| ||| Sbjct 15581 TTCGCCATCTACCTGGAGCCCTGGCACTTCGACATCTTTGAGTTTCTCGACCTGAAGAAG 15522 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 ||| ||| || || | |||||||| | |||||||||||||| |||||| | || ||| Sbjct 15521 AACACCGGGAAGGAGGAGCAGAGGGCCCGGGACCTCTTCTACGCGCTCTGGATCCCGGAC 15462 Query 94300 CTTTTTATGAAACGCGTCGAGA 94321 || || |||||||| || |||| Sbjct 15461 CTCTTCATGAAACGGGTGGAGA 15440 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCA 94544 ||||||||| ||||||||||| | | ||||||| | |||| |||| ||||||||| Sbjct 13338 GGAGACGGGGACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCA 13279 Query 94545 GCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 | |||| || |||||| || || || |||||||||||||| ||||| || Sbjct 13278 GAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGATTGTGGAGTACAC 13225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494544586372680