Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25428 104 2e-17 seq25442 89.7 5e-13 >seq25428 Length=70394 Score = 104 bits (114), Expect = 2e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||||| ||||||||||||||| || ||| ||||| || ||||| | Sbjct 13226 TGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 13285 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| ||||| ||||| ||||| ||| |||||||||| || Sbjct 13286 TGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 13325 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 153303 GCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTG 153362 ||||| | |||||| ||||| || || | ||||| ||||| ||| ||| |||| ||| Sbjct 7787 GCCAGCTGGCAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATCTGTTGGTTG 7846 Query 153363 AGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGA 153422 || | ||| | |||||||| | || | ||||| || | |||||||||||||| Sbjct 7847 AGCAGCTGCGCCTGGGCGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGG 7906 Query 153423 CCCTGGATACCGACGCCGATGGGTCGATG 153451 ||||| | |||| ||||||||| || || Sbjct 7907 CCCTGCACCCCGATGCCGATGGGGCGGTG 7935 >seq25442 Length=71287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || || || || ||||| || | | Sbjct 26937 GACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 26878 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || ||||| || || ||| || || | Sbjct 26877 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACG 26818 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||||||||| | || | ||||| ||||||| || || Sbjct 26817 TTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGGTCTTC 26758 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 26757 ACAAAGATCTGCAT 26744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496083230663760