Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq28653 165 1e-35 seq21173 125 1e-23 >seq28653 Length=47310 Score = 165 bits (182), Expect = 1e-35 Identities = 208/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || ||||||||||| || |||||| || | | || || ||||||||||| Sbjct 5356 GGGCAGCCCTTCACATTATTGCAGATGAGGCTTTGGAGTGAGGCTGTATTCACGATGTCA 5297 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || || || || || || || |||||||| | || ||||||||||| || Sbjct 5296 AAGCCCACTCTACCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACATTT 5237 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || |||||||| || || || ||| ||||||| |||||| Sbjct 5236 CCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTCTCACCAAAGATG 5177 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || ||||| || ||||| || | |||| ||| ||| | ||| | ||| || | || Sbjct 5176 GCTCCAGGACGTGGCTTTTCAAC-AAGAAGAGCAGGGTATAATTCCATAGCATCAATATC 5118 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| |||| | || ||||| || || ||||||||| Sbjct 5117 TCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTCTCACCT 5075 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| ||||||| |||||||| || ||||| | ||||||| || ||||| | Sbjct 2115 TCATCATCCCATTCTGGGTGTTCTCCCTTAAGAACGGCACAGACCCGATTATGTTCCCGG 2056 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| | ||||| |||||||| | || || || || ||||| || || | || || Sbjct 2055 AGCCACAATGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAGACCTCCTGTCCTACA 1996 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG 9933 | ||| ||| | ||| || || | ||| | ||| | ||| | | |||| || ||||| Sbjct 1995 GAAAATTTCAGGTGATCAGGGACGTGGGGTGGATAGATCATTTCCGCCTGAGTTTCTTTC 1936 Query 9934 ACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 || || || ||||||||||| || ||||| | ||| Sbjct 1935 ACAGTAGGTGGATACATTTCTCCATCAATCATCTG 1901 Score = 100 bits (110), Expect = 4e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAAT 9550 |||||||||||||| | ||| || | |||| || ||| | | | ||| |||| Sbjct 3112 ATGGAATTGTTGTACATGAACTGCTGGTAAGTGTAGTCTTGGTTTTGGATAT--GAAAGG 3055 Query 9551 CATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCT 9610 |||||||| |||| ||||||| ||||||| || |||||||| || ||||||| ||||| Sbjct 3054 TATCAGGCAGAAGAGGATGCCAGTGGTAGAGAGTGTTGAACTCTGCTGCTATTCTGTTCT 2995 Query 9611 GGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTA 9668 | |||||||| | ||| ||| || | || || ||||| | || | ||| ||||| Sbjct 2994 GATACTGAAATCGCTGGT--TGAAAAGAAGTTCTGGATCAAACTTCAGTTTGAAATGGTA 2937 Query 9669 CCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || | || || || || | | || | ||| || |||||||| || Sbjct 2936 TCCACTTAAATGTTGCACGTAGTCTTCAATCACAATCTTGATGGTTTCTCC 2886 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||||||||| ||| | |||||| | |||||| | |||| ||| | || Sbjct 967 CTTACCCCATGCCCCAAACCTTTTGTGAAACCTGGTCCTTTCTGAGTATCTGTCTTGAAG 908 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 | ||||| || || || || | || || | |||||| | || ||||| || ||||| Sbjct 907 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 848 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACGC 10301 || || || | |||| | || | ||| || |||||| | ||||||| || || || Sbjct 847 GGAATGAATTTTCTCCTTAGCAAGAATTTTTCTACAATCACTTTTGAATCTGGAAGCTGC 788 Query 10302 GCCTTACCTGA 10312 ||| ||||| Sbjct 787 TTCTTGCCTGA 777 >seq21173 Length=136489 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8934 TTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACG 8993 |||| || |||||||| || || | | ||||| || |||||||| |||||||| Sbjct 112526 TTGCCGTGTTCACGATTCGGAAGCCGGTGGCACCGCCAAAAGTGCTGGGCTTCCAGTATT 112585 Query 8994 CCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGA 9053 | |||||||||||| |||| ||| |||||| |||||||| || |||||||||| ||| | Sbjct 112586 CGGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCTA 112645 Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGA 9113 | |||||||| || |||||| ||| | || || || | | ||| | | ||| Sbjct 112646 TCATGCTCTCTCCAAAGATGCTGTTGGGGTAGGTCTTCTCCACCAACAGGCCGGGGAAGA 112705 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCA 9157 || | ||| || | ||| ||||| || ||||||| || |||| Sbjct 112706 ACTCCAGAGCATCAATGTCTCCATACAGCGCTTCCAGCTTGGCA 112749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723466707052200