Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq25428 86.0 8e-12 >seq25428 Length=70394 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| | | |||||||| |||| ||| || || |||||| Sbjct 6735 TAGATGTTGCTGGTGTAGGGCTCCACCGATTCATTGTTCCCCAGGATCTGAGCCGTGGAG 6794 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || ||||||||||| |||| || |||||||| Sbjct 6795 GCCGTGGGCATGGGGGCCACCAGGAGGCTGTT 6826 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| | ||| || || || | || | ||| |||||||||| ||||| || Sbjct 13225 GTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 13284 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||| || || |||||||||||||| || ||||||||||||||||| || Sbjct 13285 TTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGA 13344 Query 116593 GACTTGAGAATAGCCTTCCA 116612 |||| || || || | ||| Sbjct 13345 GACTCGATGATGGCGTACCA 13364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613285700894280