Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq25428 131 3e-25 seq20203 86.0 1e-11 >seq25428 Length=70394 Score = 131 bits (144), Expect = 3e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | ||| || | |||||| || || ||||| ||||| Sbjct 4156 CCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCAATGTGGATGTT 4215 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTT 204036 |||||||||||| ||||||||||| | | |||| || || ||||| || | |||||||| Sbjct 4216 CAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCCGCCATCTTCAGGATGGTCTT 4275 Query 204037 CTGCGAAATCTCCCACACCGTCTTG 204061 |||||| |||||||||||||||||| Sbjct 4276 CTGCGAGATCTCCCACACCGTCTTG 4300 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| ||||||||||| | ||| | |||||| | |||| | ||||||||| Sbjct 13230 CTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 13289 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||||||||| |||| ||||||||| | |||| | ||| | || ||||| ||||||| Sbjct 13290 CTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGA 13346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || |||||||||| |||||| | | |||| ||||| | || || | || Sbjct 6704 CTGGAACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGA 6763 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 || ||||| || | |||||||| ||| ||||||||||||||| |||| || ||| Sbjct 6764 TTCATTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAGGCT 6823 Query 204316 GTTGCGCACACCGT 204329 ||| | || |||| Sbjct 6824 GTTCCTGACCCCGT 6837 >seq20203 Length=145477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 214899 CGTGTCCCGCCAACCACTACACCGAATTTTGGAACTACCTGAACCGGTGTCTGTACTGCG 214958 ||||| || | | ||||||||||| | ||||||||||||| || |||| |||||||| Sbjct 46469 CGTGTGCCAACGAGCACTACACCGAGTATTGGAACTACCTGGACAGGTGCTTGTACTGCA 46528 Query 214959 GCGTGCGATG-CACAGAGCAGCAGGTGGAAAAATCGACCTGCAGCGCCACTCACAACAGA 215017 || | || || |||| | | ||||||| | | |||| | || |||||||| Sbjct 46529 GCATCCGCTGTAACAG-CCTGGAGGTGGAGGTGGTGCCGTGCAACAAGACCCACAACAGG 46587 Query 215018 GTGTGCGAATGCAAGCCTGGCTACCA 215043 |||||| | |||||||| |||||||| Sbjct 46588 GTGTGCAAGTGCAAGCCGGGCTACCA 46613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794868119154480