Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq25442 120 7e-22 seq27101 105 2e-17 >seq25442 Length=71287 Score = 120 bits (132), Expect = 7e-22 Identities = 154/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| || |||||||| |||| ||||||||||| | ||| | |||||||||||| Sbjct 26949 AGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGC 26890 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 || || || || ||||| || | ||||||||| ||| ||| ||||| ||||| ||| Sbjct 26889 TGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATC 26830 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| || | |||||| | | || || || | ||||| || || || Sbjct 26829 TTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCA 26770 Query 199604 GTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || | || |||||||| || || |||||| Sbjct 26769 GTCAAGGTCTTCACAAAGATCTG---CATTTT 26741 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||||| | ||| | ||||| Sbjct 28520 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATC 28461 Query 199477 TTCCAGCTGCTTTCCGGCGAA 199497 ||||||||| || || || || Sbjct 28460 TTCCAGCTGTTTGCCAGCAAA 28440 >seq27101 Length=56424 Score = 105 bits (116), Expect = 2e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| ||||| || |||| ||||||||||| | || | |||||| Sbjct 16186 AGAACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 16127 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| || |||||||| || | ||||||||| ||| ||| ||||| Sbjct 16126 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTC 16074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178485324220161