Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25442 111 2e-19 seq27101 95.1 1e-14 >seq25442 Length=71287 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || || |||||||||||| | || || ||| || Sbjct 26741 AAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAAACCATCACCCTAGAGGTGGAGCCC 26800 Query 38301 ACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | || |||| | || | || |||| || || || || ||||| | || Sbjct 26801 AGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 26859 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || |||||||||||||| || | ||||| ||| ||||| Sbjct 26860 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGACTA 26919 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 26920 CAACATCCAGAAGGA 26934 >seq27101 Length=56424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 || || || || ||||| ||||||| ||| |||| || | ||| ||||| |||||||| Sbjct 16068 GATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAA 16127 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||||||| |||||||||||||| || || | || || ||| | || || Sbjct 16128 GATGGCCGCACCCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTCCATCTTGTTCTC 16187 Query 38457 CGTTTGAGAGGCGGC 38471 ||| ||||||| ||| Sbjct 16188 CGTCTGAGAGGAGGC 16202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499992218862720