Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5804 259 2e-63 seq21159 107 8e-18 seq23897 100 1e-15 seq27186 87.8 7e-12 >seq5804 Length=195880 Score = 259 bits (286), Expect = 2e-63 Identities = 1041/1609 (65%), Gaps = 59/1609 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| | || ||||| | || || || || |||| |||| | || || Sbjct 178899 GCCATAGGCATTGACTTGGGCACCACGTACTCCTGCGTCGGAGTTTTCCAACACGGGAAA 178958 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || ||||| || || |||||||| || ||||| || | || |||||| Sbjct 178959 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACGCCGAGCTATGTTGCCTTTACG 179018 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | || | || | || || || | ||| | || ||| |||| | Sbjct 179019 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAACCAAGTGGCTATG--AATCCCAACA 179076 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | |||||| || ||| | |||||||| | | |||||| || || || Sbjct 179077 ACACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCAACGGTGCAGT 179136 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || ||| ||| || | || || |||||| | | |||| Sbjct 179137 CCGATATGAAGCACTGGCCTTTCCGTGTGGTGAGCGAAGCGGGGAAGCCCAAGGTACAAG 179196 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | ||||| |||| || || || ||||||||||||||| |||||||| | | Sbjct 179197 TCGAGTATAAGTGTGAGGTCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 179256 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATT 451330 | |||||||| |||| ||| || || |||| || | | | | || ||| |||||| Sbjct 179257 CCAAAATGAAGGAAATAGCCGAGGCTTAC-TTGGGTCGCAAAGTCCAGAGTGCTGTAATT 179315 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || |||||||| | ||||| ||||| || |||||||| || ||| Sbjct 179316 ACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATT 179375 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||| | ||||| | || || |||||||| || || || ||||| | || ||||| Sbjct 179376 ACAGGTCTCAATGTATTGCGCATCATTAATGAGCCGACGGCTGCTGCCATTGCCTATGG- 179434 Query 451451 CTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 | ||| || || || | ||| || || ||| | | | ||||| || ||||| Sbjct 179435 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTGCTGATCTTTGACTTGGGTGG 179494 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || |||| ||| | | | ||||||||||| | |||||||| || | || Sbjct 179495 TGGCACATTTGATGTTTCCATTTTGACCATTGAAGATGGCATCTTTGAAGTGAAATCTAC 179554 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG-GAATGGTTGA 451625 ||| ||||| ||| | || || || || |||| ||| || ||| | ||| Sbjct 179555 TGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTTGT 179614 Query 451626 AAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAG 451683 | | ||||| || || | ||| || || ||| || ||| | |||| || | Sbjct 179615 GGA--GGAATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTTCG 179671 Query 451684 ACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACTA--CT 451741 ||| || ||| | |||| ||| ||| ||| || ||||| | | | | | || Sbjct 179672 ACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTC--CTCCACCCAGGCT 179729 Query 451742 AGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTC--TTACCCGTG 451799 ||| | ||||| ||| ||||||| || ||| | |||| || ||||||||| Sbjct 179730 TCTATTGAGATTGACTCGTTATTTGATGGCATTGAT--TTCTACACATCAATTACCCGTG 179787 Query 451800 CTAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTG 451853 || ||||| |||| || | || | | | |||| | ||||||| | Sbjct 179788 CTCGCTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTGG 179841 Query 451854 ATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAG 451913 | | | | | |||| |||| | |||| | ||| |||||||||| || || | Sbjct 179842 AGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTTG 179901 Query 451914 GAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGA 451969 |||| || || || || || || || ||| | || | | |||| ||| ||| Sbjct 179902 GAGGCTCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGGA 179957 Query 451970 AAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029 ||| | ||| || ||| ||||||||||||||||||| |||||||||||||| || || Sbjct 179958 AAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAG 180017 Query 452030 GCAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGT 452088 || |||||||||| ||| || || ||||| | ||| | ||| | | ||||| Sbjct 180018 GCTGCTATTCTAATGGGTGACAAAT-CCGAAAACGTGCAAGACCTGCTGCTGCTTGATGT 180076 Query 452089 AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACG 452148 | |||| || ||||| || |||| || |||||||| |||||||| ||||| ||||| Sbjct 180077 AGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACG 180136 Query 452149 AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACC 452208 || ||||||| || | | || || || | || | | | | | ||||| Sbjct 180137 TAACACAACTATTCCCACCAAGCAAACCCAGACCTTCA--CCACCTATTCAGA--CAACC 180192 Query 452209 AG----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 || |||| | ||||||| ||| || || | || ||||| || |||||| Sbjct 180193 AGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAATAATC 180252 Query 452265 AACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTG 452324 || || | ||| || || ||||| ||| || | || || ||||||| Sbjct 180253 TGCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTG 180312 Query 452325 AAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCA 452383 | | || | ||| |||||||||||||||| || ||||| | |||||| || || | || Sbjct 180313 AGGTGACGTTTGACATTGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCA 180372 Query 452384 TCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGA 452442 | |||||| |||| || |||||||| |||||||| ||| ||| | ||||| || Sbjct 180373 -CAGGAAAA-GAGAACAAGATTACAATAACTAATGACAAAGGCCGCCTCAGCAAAGATGA 180430 Query 452443 TATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 ||||| ||||| | |||||||| | ||||| || |||||| Sbjct 180431 CATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGAA 180479 >seq21159 Length=141513 Score = 107 bits (118), Expect = 8e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 || ||||| |||||||||| || || || |||||||| || || | || |||||||| | Sbjct 70715 CAATTACTAATGCAGTAATCACCGTCCCAGCTTATTTTAACGACTCCCAGCGGCAAGCCA 70656 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | |||||||| || |||||||| | ||||||||||| || || |||||||| |||| Sbjct 70655 CCAAAGATGCCGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAATGAACCCACAG 70596 Query 451431 CAGCTGCTCTAGCATATGGACT 451452 | || || | || ||||| || Sbjct 70595 CGGCAGCCATTGCGTATGGTCT 70574 >seq23897 Length=295440 Score = 100 bits (110), Expect = 1e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || |||||||||||||| | || || || || || Sbjct 228525 GTTACAAATGCTGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCTACA 228466 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| |||||||||||||| || || || ||| Sbjct 228465 AAAGATGCCGGAACCATTGCTGGTCTCAATGTGCTTCGAATTATTAACGAGCCAACCGCA 228406 Query 451433 GCTGC 451437 ||||| Sbjct 228405 GCTGC 228401 >seq27186 Length=52555 Score = 87.8 bits (96), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| ||||| |||||||| || |||||| | || |||||||||| || Sbjct 18820 GCCACTAAAGATGCTGGACAGATTGCTGGATTGAATGTTTTGAGAGTTATTAATGAGCCA 18879 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||| || || ||||| |||||| ||| Sbjct 18880 ACAGCTGCAGCCCTAGCTTATGGATTAG 18907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974987258857364