Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5804 392 2e-103 seq21159 114 1e-19 seq12304 95.1 9e-14 seq21351 93.3 3e-13 seq22897 91.5 1e-12 seq23897 89.7 4e-12 seq27186 87.8 1e-11 >seq5804 Length=195880 Score = 392 bits (434), Expect = 2e-103 Identities = 1009/1518 (66%), Gaps = 28/1518 (2%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 |||||| || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 180404 ATTAGTTATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAG 180345 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||| ||||| | ||||| || || |||||||| || || || | | ||||| Sbjct 180344 GATACCATTTGCATCAATGTCAAACGTCACCTCAATTTGGGGCACACCACGAGGTGCAGG 180285 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| || ||| || | ||| | ||||| |||||| || || || | || || Sbjct 180284 TGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTGGTCATGGCTCTCTC 180225 Query 517393 ACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 |||||| | | ||| | || | ||||| | || || |||||||| || || || | Sbjct 180224 ACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAATAGGTGGTGAAGG-T 180168 Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 180167 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGTTTGATTAAGGCAGTCATCACACCACC 180108 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 || || || | ||| |||||||| || | ||||||| || | | | ||| | || Sbjct 180107 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGCAGGTCTTGCACGTT 180048 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 ||| | | ||| | |||||||| || || | ||||||||||||||| |||||||| Sbjct 180047 TTCGGATTTGTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTC 179988 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTC 517688 ||||||||| | ||| ||||| | ||| ||||| || || | ||| | || || | Sbjct 179987 ATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTT-TT 179929 Query 517689 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 517748 | ||| || ||||||| ||| |||||||| | |||||||||| | |||| ||| | Sbjct 179928 GGATCTTGGGGATACGAGTTGAGCCTCCAACCAGAACAATTTCATTAATCTGTCCTTTGT 179869 Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTG 517808 | || || | ||| | | | || || || ||||||||| | | || | || | Sbjct 179868 CTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAG 179809 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAA 517866 | || || || || ||| | ||| | ||| | || ||||||| || || || Sbjct 179808 CATTGAGCTCCTCAAAGCGAGCACGGGTA--ATTGATGTGTAGAAATCAATGCCATCAAA 179751 Query 517867 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926 || || |||| ||||| | || || || || ||| || | |||||| || | ||| Sbjct 179750 TAACGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTC 179691 Query 517927 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATAT 517984 ||| ||||| | || | ||| | || | ||| ||| | | || |||| Sbjct 179690 ACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATGC 179633 Query 517985 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 518042 || | |||||| || || |||| ||| | || | ||||| ||||| || || || | Sbjct 179632 TTGCGCTTGAATTCCTC--CACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCAC 179575 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102 |||| | |||| ||| | |||| | | |||| || | |||||||||| | ||||| Sbjct 179574 CCAAATGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAA 179515 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTT 518156 | |||||| || |||||||||| ||||| || || |||||| | | || Sbjct 179514 TGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTC 179455 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 || |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 179454 TGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCCGTCGGCTCATTAATGATGC 179395 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| ||||| ||||| | ||| | || |||||||| |||||||| | ||| || || | Sbjct 179394 GCAATACATTGAGACCTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCAT 179335 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAATATAAGCGCTT 518335 | || |||||||| |||||||| || ||| || | |||| ||| | ||||| Sbjct 179334 TGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCGACCCAAGTAAGCCTCG 179276 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || ||| |||||||| | || | ||| || ||||||| ||| || | | |||| Sbjct 179275 GCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGGTCTTG 179216 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 ||| | ||| |||| | | || || | | | | || || Sbjct 179215 ACCTCACACTTATACTCGACTTGTACCTTGGGCTTCCCCGCTTCGCTCACCACACGGAAA 179156 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||||| |||||||| || || || || ||||| ||| | | ||||| | || Sbjct 179155 GGCCAGTGCTTCATATCGGACTGCACCGTTGAGTCATCAAATTTGCGGCCAATGAGACGC 179096 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || |||||||| || || ||| | ||||| || || |||| | |||||||||||||| Sbjct 179095 TTGGCATCAAAGATGGTGTTGTTGGGATTCATAGCCACTTGGTTCTTGGCTGCATCTCCG 179036 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || || |||| || || ||||| | |||||| || || ||||| || ||||| || Sbjct 179035 ATGAGGCGTTCAGTGTCCGTAAAGGCAACATAGCTCGGCGTAGTGCGGTTGCCTTGGTCG 178976 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 518695 || || ||||| || ||||| || | ||| | || || || || | || || || Sbjct 178975 TTGGCGATAATCTCCACTTTCCCGTGTTGGAAAACTCCGACGCAGGAGTACGTGGTGCCC 178916 Query 518696 AAATCAATACCAATAGCA 518713 || ||||| || || ||| Sbjct 178915 AAGTCAATGCCTATGGCA 178898 >seq21159 Length=141513 Score = 114 bits (126), Expect = 1e-19 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| ||||||||||||| || || || || |||||||| || || | | |||| Sbjct 70565 TTTTTATCCAGACCATACGCAATGGCTGCCGCTGTGGGTTCATTGATGATGCGAAGAACA 70624 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | || |||||||| |||||||| | || || ||||||||||| Sbjct 70625 TTCAGGCCAGCAATGGTGCCGGCATCTTTGGTGGCTTGCCGCTGGGAGTCGTTAAAATAA 70684 Query 518285 GCAGGAACAGTAATAACGGCATCAGT 518310 || || || || || || |||| ||| Sbjct 70685 GCTGGGACGGTGATTACTGCATTAGT 70710 >seq12304 Length=164263 Score = 95.1 bits (104), Expect = 9e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| || ||| | || ||| | |||||| | | Sbjct 92593 TGTACATTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTAGGT 92534 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||||||||||||||| ||||| ||||| ||||| || |||||| | | |||||| | Sbjct 92533 GTTATTGGAAGAGATAGATATGGGGTTTTTCCACTCAGGGGAAAAATGCTTAATGTTCGT 92474 Query 635561 GATGC 635565 || || Sbjct 92473 GAGGC 92469 >seq21351 Length=128511 Score = 93.3 bits (102), Expect = 3e-13 Identities = 136/192 (71%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 1047664 AAATTTACAGGAAAATTATTTTATGATATTGTTATGGGTATTGAATTTAATCCTGAAATA 1047723 ||||| || || || || || ||||| | | ||||| |||||||||||||| | Sbjct 25881 AAATTCACTGGCAATTTCTTCTATGACTTCATGATGGGAATTGAATTTAATCC---ACGC 25937 Query 1047724 TTTGGAAC------TGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTGG 1047777 || |||| |||||| ||| ||||||||||||| |||| |||||| | | ||| Sbjct 25938 TTGGGAAAGTGGTTTGATTTCAAATTGTTTTTTAATGGCCGACCTGGAATTGTAGGATGG 25997 Query 1047778 AATTTGATTAATTTGTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAAT 1047837 | |||||||||||| || | ||| |||||| | ||| | |||| | || ||||| Sbjct 25998 ACTTTGATTAATTTATCCTATGCTGCAAAACAACAGGAATTGTATGGACAAGTCACTAAT 26057 Query 1047838 TCAATGATTCTT 1047849 || ||| | ||| Sbjct 26058 TCTATGCTACTT 26069 >seq22897 Length=314272 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||| ||| Sbjct 150430 AACTGCACACTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 150371 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | || || || | | |||||| || ||||| ||||||||||| |||| || Sbjct 150370 GGAGTTGTGGGTAGGGACAAATTTGGAGTATTTCCACTGCGAGGAAAACTTCTGAACGTA 150311 Query 635558 AGGGATGC 635565 |||| || Sbjct 150310 CGGGAAGC 150303 >seq23897 Length=295440 Score = 89.7 bits (98), Expect = 4e-12 Identities = 221/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || || ||||||||||| || || | | | || |||| ||| || ||||| Sbjct 227693 GCACCGTAGGCTACAGCTTCATCGGGGTTGATGCTCTTGTTGAGTTCTTTGCCGTTGAAG 227752 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| ||| |||| ||| | ||| || || || | || || ||||| | ||||| Sbjct 227753 AAATCCTGAAGGAGTT-TCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGCACAAT 227811 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || |||||||| ||||||||||| || | |||| || |||| || ||||| || || Sbjct 227812 ATCGTGCACCTGAGATTTATCCAGCTTGGCATCCCGTAGCGCTTTCTCCACGGGGTCCAG 227871 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | |||||||| | || |||||||| ||||| || || || | Sbjct 227872 TGTGCCGCGGAACAAGTCGGCGTTCAGCTCTTCGAAGCGAGCTCGGGT--GATGGAAGTG 227929 Query 517848 TA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || |||| || || || ||| || |||| |||||| | | ||||| ||| ||| Sbjct 227930 TAGAAATCGATGCCCTCATACAGGGAGTCAATTTCAATACTGGCCTGAGTGCTAGAGGAT 227989 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGT 517935 || | ||||| || || || || || || Sbjct 227990 AGGGTGCGTTTCGCCCGCTCGCAGGCGGT 228018 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| ||||| || ||||| || |||||||||| | ||| Sbjct 228377 TTTTTGTCTAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCGTTAATAATTCGAAGCACA 228436 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 228437 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAA 228496 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 228497 GCTGGGACTGTGACCACAGCAT 228518 >seq27186 Length=52555 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 18925 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 18866 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 18865 CTCTCAAAACATTCAATCCAGCAATCTGTCCAGCATCTTTAGTGGC 18820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779389130399398