Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5804 426 2e-114 seq23897 190 3e-43 seq21159 145 1e-29 seq8337 134 2e-26 seq10558 82.4 1e-10 >seq5804 Length=195880 Score = 426 bits (472), Expect = 2e-114 Identities = 1048/1574 (67%), Gaps = 30/1574 (2%) Strand=Plus/Minus Query 6590 TCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTA 6649 || || ||||| ||||| |||||||| ||||| | | || || ||||| || Sbjct 180457 TCTGCTTCTTGCACCATGCGGTCAATGTCATCTTTGCTGAGGCGGCCTTTGTCATTAGTT 180398 Query 6650 ATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCA 6709 || |||||||| | ||| || | | ||| || | ||| | ||||| | |||||| Sbjct 180397 ATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAGGATACCA 180338 Query 6710 TTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATA 6769 |||||||||| || ||| | || | |||||| || ||| | ||||| | ||||||| Sbjct 180337 TTTGCATCAATGTCAAACGTCACCTCAATTTGGGGCACACCACGAGGTGCAGGTGGAATA 180278 Query 6770 CCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCA 6829 || || | ||||| | || || | | | || ||| | | | | | ||||| ||| Sbjct 180277 CCTGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTGGTCATGGCTCTCTCACCCTCA 180218 Query 6830 TAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTC 6889 || |||| | ||| | || || ||| || | |||| | || || | Sbjct 180217 TACACTTGTACCAGCACACTACTCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTTTGC 180158 Query 6890 TTAGATGGAATCGTCGTATTTC-TCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 || | ||||| || || || | | || ||| | ||||| | |||||| ||| || Sbjct 180157 TTGGTGGGAATAGTTGTGTTACGTTTGATTAAG-GCAGTCATCACACCACCAGCAGTCTC 180099 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | || ||||| || |||| || || | || | ||||||||| || |||| Sbjct 180098 AATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGCAGGTCTTGCACGTTTTCGGATTT 180039 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 |||||| ||| || || || || || | || || ||||| || || ||||| || || Sbjct 180038 GTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTCATCAGGATT 179979 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || |||| || || ||||| || ||||| | || | || | ||| || || || Sbjct 179978 TATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTTTTGGATCTTGGG 179919 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA-CTTTCGATTTATCGATCTTTG 7187 ||| || || || || || |||| ||| |||||||| | || || ||| || | ||| | Sbjct 179918 GATACGAGTTGAGCCTCCAACCAGAACAATTTCATTAATCTGTCC-TTTGTCTAGCTTAG 179860 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 || ||||| | || || |||||||| | | |||||| | || | || | Sbjct 179859 CATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAGCATTGAGCT 179800 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 ||||||| || ||||||||||| ||||| |||||||||| ||| || ||||||| |||| Sbjct 179799 CCTCAAAGCGAGCACGGGTAATTGATGTGTAGAAATCAATGCCATCAAATAACGAGTCAA 179740 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 | ||||| | | || | | ||| | || || || || | ||||| || || | Sbjct 179739 TCTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTCACAGGCTGTGC 179680 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | | || |||| || ||| ||| || | ||| || |||||| || || || || | Sbjct 179679 GGAGCCGTCGAACTGCTCGCTTGTTGCCAGCAATGTCACGCTTATGCTTGCGCTTGAATT 179620 Query 7428 CTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCC 7487 | || || || | | | | || || || || |||||||| || ||||| | Sbjct 179619 CCTCCACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCACCCAAATGGGTATCTC 179560 Query 7488 CCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACG 7547 | || || | ||| ||||||||||| || |||||||| | || | ||||||||||| | Sbjct 179559 CAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAATGGAAACATCAAATG 179500 Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTAT 7601 | |||||||||| |||||| || || || ||| | || | || || || |||| Sbjct 179499 TGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCTGCTCCCTTTTTTAT 179440 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGG 7660 | | ||| || || || || || ||||| || |||||||| || || || ||| || || Sbjct 179439 CCAAACCATAGGCAATGGCAGCAGCCGTCGGCTCATTAATGATGCGCAATACA-TTGAGA 179381 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || | ||| || | |||||||| || ||||| ||||| || || || ||||| || || Sbjct 179380 CCTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTATGCAGGT 179321 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || | || || | |||||| ||| | || | || || || || |||||| Sbjct 179320 ACAGTAATTACAGCACTCTGGACTTTGCGACCCAAGTAAGCCTCGGCTATTTCCTTCATT 179261 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGT-TTCGTTTCACCGTTAA 7838 ||||| | ||||| || ||||| ||||||| | || | || || |||| ||| Sbjct 179260 TTGGTCAATACCATAGAGGAAATTTCTTCAG--GAAAGAAGGTCTTGACCTCACACTTAT 179203 Query 7839 AATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA---TACGACCAAT 7895 | || |||| | | |||| || |||| | | | ||| | | | ||| | Sbjct 179202 ACTCGACTTGTACCTTGGGCTTCCCCGCTTC------GCTCACCACACGGAAAGGCCAGT 179149 Query 7896 CTTTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 ||||||||| || ||| |||| ||| ||| || | || || |||||||| ||| Sbjct 179148 GCTTCATATCGGACTGCACC-GTTGAGTCATCAAATTTGCGGCCAATGAGACGCTTGGCA 179090 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 ||||| | ||||| ||||| ||||| || ||||||||| || || || ||||| || Sbjct 179089 TCAAAGATGGTGTTGTTGGGATTCATAGCCACTTGGTTCTTGGCTGCATCTCCGATGAGG 179030 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 ||||| | | |||||||| || || || || || || || || ||||||||||| Sbjct 179029 CGTTC---AGTGTCCGTAAAGGCAACATAGCTCGGCGTAGTGCGGTTGCCTTGGTCGTTG 178973 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || ||||| || || ||| ||| | || |||||||| || ||||| || || || Sbjct 178972 GCGATAATCTCCACTTTCCCGTGTTGGAAAACTCCGACGCAGGAGTACGTGGTGCCCAAG 178913 Query 8135 TCAATACCGATTGC 8148 ||||| || || || Sbjct 178912 TCAATGCCTATGGC 178899 >seq23897 Length=295440 Score = 190 bits (210), Expect = 3e-43 Identities = 366/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||||||||| || | || || |||||||| ||||| || Sbjct 227693 GCACCGTAGGCTACAGCTTCATCGGGGTTGATGCTCTTGTTGAGTTCTTTGCCGTTGAAG 227752 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | || ||||| || |||||||| || || ||||| |||| || || Sbjct 227753 AAATCCTGAAGGAGTTTCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGCACAATA 227812 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | |||||||| | ||| | || || || | ||| || || || |||| Sbjct 227813 TCGTGCACCTGAGATTTATCCAGCTTGGCATCCCGTAGCGCTTTCTCCACGGGGTCCAGT 227872 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||||||| ||| || || || || || ||||| ||||| || ||| Sbjct 227873 GTGCCGCGGAACAAGTCGGCGTTCAGCTCTTCGAAGCGAGCTCGGGTGATGGAAGTGTAG 227932 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | ||| || || | || ||||||||||| | | || | | || |||| Sbjct 227933 AAATCGATGCCCTCATACAGGGAGTCAATTTCAATACTGGCCTGAGTGCTAGAGGATAGG 227992 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || || || || ||||| || || || || | || || | ||||||| ||| || Sbjct 227993 GTGCGTTTCGCCCGCTCGCAGGCGGTGCGCAGGCGCCGGACGGCACGCTTGTTTTCGCTG 228052 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| ||| || | | | ||| Sbjct 228053 ATGTCCTTCTTGTGCTTCCGCTTGAACTCGGTGATGAAATGGTTGACCATCCGGTTGTCG 228112 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| || |||||||| || || ||||| || | ||| ||||||||||| || || Sbjct 228113 AAGTCTTCGCCCCCCAAGTGGGTGTCTCCCGCAGTTGATTTCACTTCAAAGATGCCGTCT 228172 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || || ||||| || || || ||||| || || || || |||||| Sbjct 228173 TCGATGGTGAGGATGGAGACGTCAAAGGTTCCCCCTCCCAGATCGAAGATCAGCACGTTC 228232 >seq21159 Length=141513 Score = 145 bits (160), Expect = 1e-29 Identities = 236/337 (70%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| |||||||| || || ||||| ||||| || || || |||| ||| || || | || Sbjct 69779 CAGCTCCTCAAAGCGAGCCCGGGTGATGGAGGTGTAAAAGTCAATGCCCTCATAGAGGGA 69838 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||||||||||| | || | | || | || ||||| || ||||| || || Sbjct 69839 GTCAATTTCAATGGAAGCCTGGGTGGAGGAGCTGAGGGTGCGCTTGGCCCGCTCGCAAGC 69898 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | || || | ||| ||| ||| | | || || |||||||| || || || Sbjct 69899 TGTGCGCAGCCGCCGGACGGCCCGCTTGTTGTCTGTGATGTCCTTCTTATGCTTGCGCTT 69958 Query 7423 AAACTCTTCAGAGAA-GTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 |||||| ||| || ||| | | | || ||||| |||||||||| ||| | Sbjct 69959 GAACTCTG-AGACAAAGTGGTTCACCATGCGATTGTCAAAATCCTCACCACCCAGGTGAG 70017 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || |||| ||| ||||||||||| || | ||||| | | | || || | Sbjct 70018 TGTCTCCAGCCGTCGATTTCACTTCAAAGATGCCGTCCTCAATCGTCAGAATGGACACGT 70077 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||| |||||||||||||||||||||||||| || || Sbjct 70078 CAAAGGTACCACCACCCAGGTCAAAAATGAGGACATT 70114 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| ||||| || || ||||| || |||||||| || || |||||| Sbjct 70565 TTTTTATCCAGACCATACGCAATGGCTGCCGCTGTGGGTTCATTGATGATGCGAAGAACA 70624 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||||||||| || | |||||||| || ||||| || || || |||||||| || Sbjct 70625 TTCAGGCCAGCAATGGTGCCGGCATCTTTGGTGGCTTGCCGCTGGGAGTCGTTAAAATAA 70684 Query 7715 GCCGGGACCGT 7725 || ||||| || Sbjct 70685 GCTGGGACGGT 70695 >seq8337 Length=181363 Score = 134 bits (148), Expect = 2e-26 Identities = 465/715 (65%), Gaps = 23/715 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || |||||||| ||||| || ||||| || |||||||||||||| || Sbjct 154980 TCAAAGTCCTCCCCGCCCAAGTGGGTATCACCTGCGGTGGCCTTGACTTCAAAGATGCCG 155039 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | | ||||||||||| || || |||||||||||||||||||| | | Sbjct 155040 TCTTCCATGGAAAGGATAGAAACATCAAAGGTGCCCCCACCCAGGTCAAAAATGAGGATG 155099 Query 7577 -TTCG--TATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 |||| | | | |||| ||| | ||| || || || || || || || || || Sbjct 155100 TTTCGGCTGCCAGCCTCTTGATTCCTGGCATCCAGGCCATAGGCAATGGCAGCTGCTGTG 155159 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || ||||| | | || | ||||| ||||| | | ||||| | || || Sbjct 155160 GGCTCATTCAGGAGCTTTAGGATCTGGAGGCCCGCAATGACTCCAGCATCAATGGTGGCC 155219 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || || | |||| | |||||||| || ||||| || | || | | || Sbjct 155220 TGCCGCTGGGCATCGCTGAAGTAGGCGGGCACCGTGACAATGGCTTGGGAGATGGAGGAG 155279 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || || | | ||||| || | || ||||| | || ||||| || Sbjct 155280 CCCAGGTAGGCCTCAGCTGTTTGCTTCATCTTAGCCAGGACCATGGCAGAGATCTCCTC- 155338 Query 7811 GCCGCAAACTGTTTCGT--TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCA- 7867 | | | | | ||| || ||| || |||| | | | | || ||| || Sbjct 155339 -CGGGTAGAAGGTCCGTTGTTTACCTTTGTGGGAGACTTGGACCTTTAGCTTCTCCTCAC 155397 Query 7868 -GCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGA 7926 |||| | || || | | ||| | |||||| || || || || ||| Sbjct 155398 GGCAC-----ACCACAGTAAATGGCCAGTGTTTCATGTCCTCCTGTACAGCGGCATCCTC 155452 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 | |||| | || || || ||||| |||||||| || ||||| | |||||| | | | Sbjct 155453 ATACTTGCGGCCAATCAGGCGCTTGGCATCAAACACCGTGTTCTGGGGGTTGAGAGAAGC 155512 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 ||| |||| || | ||| || || || |||| | || || || || ||||| | Sbjct 155513 CTGGCTCTTGGCTGGGTCTCCAATCAGGTGTTCTGTGTT---GGTGAAGGCCACGTA-GC 155568 Query 8047 TGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA 8105 |||| || || || ||||||||||| || ||||| || ||||| ||| | ||| |||| Sbjct 155569 TGGGTGTGGTCCGCTTCCCTTGGTCATTGGCAATGATCTCTACTTTGTCATGTTGACAGA 155628 Query 8106 CGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 || | ||||| || | || ||||| | ||||| || || || | |||||||| Sbjct 155629 CGGCCACGCAGGAGAAGGTGGTTCCAAGGTCAATCCCAATAGCCAG-GTCATTTT 155682 >seq10558 Length=413728 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| || || || ||||||||||| ||||| |||||||| || || || ||||||||||| Sbjct 116722 ATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATATTCTCCAT 116663 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 116662 AAAGTCAAATGGATT 116648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634903493241720