Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10558 114 1e-20 seq24508 84.2 2e-11 seq5028 82.4 9e-11 >seq10558 Length=413728 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | || ||||| || |||| ||| | Sbjct 114603 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCT 114544 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 114543 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 114484 Query 19103 CAACTA 19108 | |||| Sbjct 114483 CTACTA 114478 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 112718 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 112659 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 112658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 112614 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| ||||| ||||||||| || ||||| ||| || || || ||| || ||||| Sbjct 116785 TTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAG--GACTTGACATCACACCCATC 116728 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||| | || | ||||||||||| || ||||| || || | || ||| Sbjct 116727 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATATTC 116668 Query 18730 TCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||| Sbjct 116667 TCCATAAAGTCAAATGGATT 116648 >seq24508 Length=282627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| |||||||| |||||||||| || | || ||||| |||||||||||| | Sbjct 170 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCATGG 229 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATT-TTCTTTAAGAATAGGTTCC 19575 ||||| || || || || ||||||| || ||| ||| |||| || ||||||| Sbjct 230 TATTGGATTGGGAAGATGACAAATCGATGGGGATTCTTCCTTAA-AAGAGGTTCC 283 >seq5028 Length=21598 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | || | ||||| || ||||||||||| || ||||||| ||||||||| | Sbjct 2550 ATCTTTGATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGA 2491 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 |||||||| || || ||||| | ||||||| | ||| ||||| Sbjct 2490 TATCTGAAAGCCATAGAAACAGCGAGCTTCTGGGACCTGCACTTC 2446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561905857644120