Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5804 212 5e-49 seq21159 129 5e-24 seq23897 96.9 3e-14 >seq5804 Length=195880 Score = 212 bits (234), Expect = 5e-49 Identities = 379/548 (69%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || ||||| || || || || ||||| || || || || |||| ||| | || ||| Sbjct 178899 GCCATAGGCATTGACTTGGGCACCACGTACTCCTGCGTCGGAGTTTTCCAACACGGGAAA 178958 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| ||||| || ||||| ||| | ||||| || |||||| | || ||| Sbjct 178959 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACGCCGAGCTATGTTGCCTTTACG 179018 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| | | || |||||||| || | |||| || ||||| | ||| Sbjct 179019 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAACCAAGTGGCTATGAATCCCAACAAC 179078 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | ||||| | | ||| |||| || || || ||| | Sbjct 179079 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCAACGGTGCAGTCC 179138 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| |||||||||| | || | | | || || || | | ||| | Sbjct 179139 GATATGAAGCACTGGCCTTTCCGTGTGGTGAGCGAAGCGGGGAAGCCCAAGGTACAAGTC 179198 Query 550291 TACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||| | | | || | || | || ||| ||||||| |||||||| || | Sbjct 179199 GAGT-AT-AAGTGTGAGGTCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 179256 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 |||||||| ||| |||| |||| | |||| |||| | ||| ||||| | Sbjct 179257 CCAAAATGAAGGAAATAGCCGAGGCTTACTTGGGTCGCAAAGTCCAGAGTGCTGTAATTA 179316 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 ||||||| ||||| || |||||||| ||||| ||||| || |||||||| || ||| Sbjct 179317 CTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATTA 179376 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || ||||| | || || || ||||| || || |||||||| |||| ||||| Sbjct 179377 CAGGTCTCAATGTATTGCGCATCATTAATGAGCCGACGGCTGCTGCCATTGCCTATGGTT 179436 Query 550530 TTGATAAA 550537 | |||||| Sbjct 179437 TGGATAAA 179444 Score = 132 bits (146), Expect = 4e-25 Identities = 546/847 (64%), Gaps = 28/847 (3%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 |||||||| ||||| || | ||||| ||||||| | ||| | ||||| || || Sbjct 179526 GAAGATGGCATCTTTGAAGTGAAATCTACTGCTGGAGATACCCATTTGGGTGGGGAGGAC 179585 Query 551817 TTTGATAATAGACTGGTAT--CATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTG 551874 ||||| ||| | |||| ||| |||| || || || || || || | || || Sbjct 179586 TTTGACAATCGCATGGTGAGCCATTTTGTG--GAGGAATTCAAGCGCAAGCATAAGCGTG 179643 Query 551875 ATCTATCTA-CATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAA 551933 | | || || | | | || |||| || || | || || || |||||||||||| Sbjct 179644 ACATTGCTGGCAACAAGCGA-GCAGTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAA 179702 Query 551934 CGAGCTCT---TTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGA 551990 || | || ||| || || || | ||||||| | || || |||||||| || Sbjct 179703 CGTACCCTGAGTTCCTC---CACCCAGGCTTCTATTGAGATTGACTCGTTATTTGATGGC 179759 Query 551991 ATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTT 552050 ||||||| | || | ||| | | || ||||| || | | |||||||||| Sbjct 179760 ATTGATTTCTACACATCAATTACCCGTGCTCGCTTTGAGGAGCTCAATGCTGATCTCTTC 179819 Query 552051 AGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAA-TCCAA 552109 | || ||||||| || || | | | | | ||| | ||| | || ||| || Sbjct 179820 CGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAG 179879 Query 552110 AGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT 552169 | || |||||||||| || ||||| || || || | || || || || | ||| ||| Sbjct 179880 ATTA-ATGAAATTGTTCTGGTTGGAGGCTCAACTCGTATCCCCAAGAT---CCAAAAGTT 179935 Query 552170 -----AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCT 552224 ||| ||| ||| ||||| ||| | |||| |||| | ||||| ||||| ||| Sbjct 179936 GCTCCAAG-ACTTCTTT-AATGGAAAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCT 179993 Query 552225 GTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGACAAACTGATGAAAAAC 552282 || || |||||||| || | || || |||||||| | |||||| ||||| Sbjct 179994 GTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCTAATGGGTGACAAA--TCCGAAAACG 180051 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 | ||| | | | || | ||||| | || || ||||| ||| | || || | ||| | Sbjct 180052 TGCAAGACCTGCTGCTGCTTGATGTAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTG 180111 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 || | |||||| | ||| | | || || |||||||| || || | | | Sbjct 180112 GTGTGATGACTGCCTTAATCAAACGTAACACAACTATTCCCACCAAGCAAACCCAGACCT 180171 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || |||||||| || || | | ||| | ||| | | ||| || || ||| Sbjct 180172 TCACCACCTATTCAGACAACCAGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAG 180231 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | || || || ||||||| || || | ||| | | ||||||||| ||||| | Sbjct 180232 CCATGACCAAGGACAATAATCTGCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCAC 180291 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 ||||||| || || |||||||| || || || || || ||||| ||||| || | |||| Sbjct 180292 CTCGTGGTGTGCCCCAAATTGAGGTGACGTTTGACATTGATGCAAATGGTATCCTCAATG 180351 Query 552583 TGACTGC 552589 | ||||| Sbjct 180352 TTACTGC 180358 >seq21159 Length=141513 Score = 129 bits (142), Expect = 5e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| |||||||||| || || ||||| |||||||| ||||| || || ||||| || | Sbjct 70712 TTACTAATGCAGTAATCACCGTCCCAGCTTATTTTAACGACTCCCAGCGGCAAGCCACCA 70653 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 ||||||| || |||||||| || ||||||||||| || ||||||||||| || || | Sbjct 70652 AAGATGCCGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAATGAACCCACAGCGG 70593 Query 550512 CTGCACTTGCATATGGACTTGATAAA 550537 | || |||| ||||| || |||||| Sbjct 70592 CAGCCATTGCGTATGGTCTGGATAAA 70567 >seq23897 Length=295440 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| || |||||||| | ||| |||| || || ||| Sbjct 229504 GGGATTGATCTGGGCACCACCTATTCCTGCGTTGGTGTCTTCCAACATGGCAAGGTGGAA 229445 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || |||||||| ||||| ||| ||||| | ||||| || ||| Sbjct 229444 ATCATTGCCAATGACCAGGGTAACAGGACTACGCCAAGCTATGTGGCATTCACAGATACT 229385 Query 550118 GA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || | | | | |||||||||| ||||| | |||| Sbjct 229384 GAGAGACTGA-TTGGTGATGCTGCAAAGAACCAAG 229351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027768536697670