Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10]
28,883 sequences; 1,532,390,814 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq10558 147 3e-30
seq5028 107 2e-18
>seq10558
Length=413728
Score = 147 bits (162), Expect = 3e-30
Identities = 110/129 (85%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||||||| |||| ||||||||||| || | ||| ||||||| ||||| ||| ||
Sbjct 114601 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCTTT 114542
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||||||||||| ||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 114541 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 114482
Query 37320 ACAAGACGT 37328
|| | ||||
Sbjct 114481 ACTATACGT 114473
Score = 89.7 bits (98), Expect = 6e-13
Identities = 106/142 (75%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 36825 TTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCCA 36882
||||| |||||| |||| || || ||| |||| | | | ||| ||| || ||||
Sbjct 116787 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC--AGGACTTGACATCACACCCA 116730
Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942
| ||||||||||||| || || |||| || || || || || ||||| || || ||||
Sbjct 116729 TCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATAT 116670
Query 36943 TTTCCATAAAATCAAATGGATT 36964
| |||||||| |||||||||||
Sbjct 116669 TCTCCATAAAGTCAAATGGATT 116648
Score = 84.2 bits (92), Expect = 3e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489
||||| | ||| | || ||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 112727 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 112668
Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
|| || || ||||| || ||||| ||||| | |||||
Sbjct 112667 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 112629
>seq5028
Length=21598
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| || || || | ||||||||||| ||||| || |
Sbjct 4570 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 4511
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||||||||| |||||||||| ||||| ||||| || ||||| || || ||||| |
Sbjct 4510 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 4451
Query 37318 CTAC 37321
| ||
Sbjct 4450 CAAC 4447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592102951423320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |