Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10558 147 3e-30 seq5028 107 2e-18 >seq10558 Length=413728 Score = 147 bits (162), Expect = 3e-30 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| ||||||||||| || | ||| ||||||| ||||| ||| || Sbjct 114601 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCTTT 114542 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 114541 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 114482 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 114481 ACTATACGT 114473 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 36825 TTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCCA 36882 ||||| |||||| |||| || || ||| |||| | | | ||| ||| || |||| Sbjct 116787 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC--AGGACTTGACATCACACCCA 116730 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 | ||||||||||||| || || |||| || || || || || ||||| || || |||| Sbjct 116729 TCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATAT 116670 Query 36943 TTTCCATAAAATCAAATGGATT 36964 | |||||||| ||||||||||| Sbjct 116669 TCTCCATAAAGTCAAATGGATT 116648 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 112727 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 112668 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 112667 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 112629 >seq5028 Length=21598 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| || || || | ||||||||||| ||||| || | Sbjct 4570 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 4511 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| |||||||||| ||||| ||||| || ||||| || || ||||| | Sbjct 4510 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 4451 Query 37318 CTAC 37321 | || Sbjct 4450 CAAC 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592102951423320