Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq25442 91.5 1e-13 seq27101 86.0 5e-12 >seq25442 Length=71287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | || ||| | | |||| |||| || Sbjct 26946 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGT 26887 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || ||||||||||| ||||| || || || Sbjct 26886 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 26827 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| | ||||| || || |||| ||||| || || Sbjct 26826 GCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTC 26767 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 26766 AAGGTCTTCACAAAGATCTGCAT 26744 >seq27101 Length=56424 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| ||||| || ||||| |||| | ||| || ||||| ||||||||||| ||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || || ||| | || | ||||| | ||||| || ||||||| Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || ||||| |||||||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 14488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | ||| | ||| || || || ||||| || || ||||| || | | Sbjct 16201 CCTCCTCTCAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 16142 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || || || |||| | ||| || ||||| ||| Sbjct 16141 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGA 16082 Query 101363 ATGCCTTCTTTATC 101376 |||||||| ||||| Sbjct 16081 ATGCCTTCCTTATC 16068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396138905421231