Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq27285 143 5e-29 seq25428 132 9e-26 seq115 114 2e-20 seq24459 104 4e-17 >seq27285 Length=249820 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || || | ||| || || || || |||||||| | Sbjct 105737 GCTGGCAGCCGTTGTTCACGTGGTTCATTACTTTCTGCTTCAGCTGCGCTACCTGGTCTC 105796 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || |||||||| ||||| || ||| | |||||| |||| Sbjct 105797 GGAGCGCGCTGGCCGTGTTAGACAGTCCCGCGTTCTCGTTCTTTAAGCTCTTCACCTTCT 105856 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | | |||||||||||| |||| ||||| Sbjct 105857 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCTGCATTTGGTGGCGGCCAGGCGGT 105916 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | ||| | ||| |||||||||| ||||| || ||||||| || |||||| Sbjct 105917 TGCGCAGCCGCTTCCTCTCCACCTTGATGCGCTCCTGATCTTCCATGTTAATGGGAGAC 105975 >seq25428 Length=70394 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||||||||| ||||||||||| ||||| | |||||| || ||||||| ||||||| Sbjct 7735 GCCTTTGCTGACGGGGCTGCCGTGGTAGGTCTGGTAGGGCCCCTGCTCCTCAGCCAGCTG 7794 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 |||| |||| |||||| |||||||||||||| || || |||| ||||||| || Sbjct 7795 GCAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATCTGTTGGTTGAGCAGCTG 7854 Query 213260 GGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 |||| | | | |||||| | |||| | ||| | || ||||| ||||| || Sbjct 7855 CGCCTGGGCGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCAC 7914 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 ||||||||||||||| | ||| | | |||| || Sbjct 7915 CCCGATGCCGATGGGGCGGTGGCGCTGGTTGGA 7947 Score = 114 bits (126), Expect = 2e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||| Sbjct 13225 GTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 13284 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||||| | ||| | |||||||||||||||||||| | ||| ||||| ||| Sbjct 13285 -TTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 13343 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | ||| || | | |||||| ||||| Sbjct 13344 AGACTCGATGATGGCGTACCACAGCTGCTGGGCCTTCACCAC 13385 Score = 114 bits (126), Expect = 2e-20 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| |||||||||| ||| |||||| ||| ||||||| || |||| ||| ||| Sbjct 15453 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCCTCCTT 15512 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| || ||| || ||||| ||||||||||| |||||| ||||||| ||| Sbjct 15513 CCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCCAGGGCTCCAGGTA 15572 Query 213941 GATGGCAAAGGCGCCCGGCCTCTTGCCG 213968 |||||| ||||| || || ||| ||||| Sbjct 15573 GATGGCGAAGGCCCCGGGTCTC-TGCCG 15599 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || || ||||||| | ||| | ||| ||||||||||| | Sbjct 6704 CTGGAACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGA 6763 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 || ||||||||||| ||||| || ||| ||| ||||||||||| ||||||||||| || Sbjct 6764 TTCATTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAGGCT 6823 Query 213038 GTTCCTCACTCCGTGC 213053 |||||| || |||||| Sbjct 6824 GTTCCTGACCCCGTGC 6839 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/131 (77%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 |||||| ||||| |||||||| ||||| | ||| |||||| ||||| | | ||| | Sbjct 4213 GTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCCGCCATCTTCAGGATGGT 4272 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CG 212813 || |||| |||| ||||||||| |||||| ||| | || | |||||| ||||| | | Sbjct 4273 CT-TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTC-GGGAATCTCC 4330 Query 212814 GGGATGTTCTG 212824 ||||||||||| Sbjct 4331 GGGATGTTCTG 4341 >seq115 Length=513077 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || || ||||| ||||| || | | || || | |||| Sbjct 447742 AGCACTTTCTGCTTGAGCTGCGCTACCTGCTCCCGGAGGAGGTTGGCCGTCGAAGCCAGT 447801 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | |||||| ||| ||||| || ||||| || | |||||| ||||| Sbjct 447802 TCGGTGTTCTGGGTCTTGAGGCTCTTGACTTTTTCTTCCAGGCGGGAGATGCGCTCCAGC 447861 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||| || || |||| ||| || | |||||| || || | ||| || || |||||| Sbjct 447862 TTCCGCCGCCGACACTTGGAGGCCGCGATGCGGTTGCGCAGCCGCTTGCGCTCGGCCTTG 447921 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 447922 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 447954 >seq24459 Length=80238 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | || ||||||||||||| || |||||||| ||||| |||||||| ||||| Sbjct 17474 TTGAGCGCTTTGACTTTCTCCTCCAAGCGGGCGATGCGCTCCAGCTTGCGCCGACGGCAC 17533 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| || || | ||||| || |||||||| || ||||| || | ||| || ||| | Sbjct 17534 TTGGAAGCCGCGATCCGGTTGCGCAGTCTCTTGCGCTCCGCTTTCAGGCGCTCTTGGCTC 17593 Query 241610 TCCATGTCGATCGGAGA 241626 ||| ||| | ||| || Sbjct 17594 TCCGCGTCCAGCGGCGA 17610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931196481726720