Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25428 123 5e-23 seq5028 84.2 4e-11 >seq25428 Length=70394 Score = 123 bits (136), Expect = 5e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||||||||||||||| ||||| | ||||| || | || || |||| Sbjct 15445 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGC 15504 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| ||| |||| ||| |||| || | ||||||||| ||||| |||||| ||| Sbjct 15505 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCCAGGGC 15564 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||| ||| | || ||||||| || Sbjct 15565 TCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 15595 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||| | |||| |||| | ||||| || |||||||||||||||||||||| Sbjct 13208 CCACCTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 13267 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || |||||| ||| ||||||||||||||||| |||| Sbjct 13268 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCG 13327 Query 221850 CGCCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 13328 TCCCCGTCTCCGTCTGAG 13345 >seq5028 Length=21598 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||||||||||| || || ||||| ||| ||| | ||||| ||||| || | Sbjct 4445 TGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCAGCCATATTTT 4504 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||||||| ||| ||| ||||| || || |||||| ||||| || || || ||||| Sbjct 4505 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCT-TACTTTCTCCAATGAACTTATTAGCAGA 4563 Query 26002 GACGA 26006 || || Sbjct 4564 GATGA 4568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928509452195520