Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5804 194 1e-43 seq21351 111 1e-18 seq21907 105 4e-17 seq5700 102 5e-16 seq23897 95.1 8e-14 seq24389 87.8 1e-11 >seq5804 Length=195880 Score = 194 bits (214), Expect = 1e-43 Identities = 534/813 (66%), Gaps = 14/813 (2%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTAT--CATGGT 475424 || ||||||||| | ||| | ||||| || || ||||| ||| | | || ||| | Sbjct 179553 ACTGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTT 179612 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTC----AACATCTGCTAAAGCA 475480 ||| || || |||||| | || |||| ||| || | |||| | |||| Sbjct 179613 GTG--GAGGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCG----AGCA 179666 Query 475481 TTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAA 475540 | |||| || | || || |||||| | || || || | || ||| | || || Sbjct 179667 GTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTCCTCCACCCAG 179726 Query 475541 ACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGG 475600 || || |||| |||| || | ||||| || ||||||| | || ||||| | Sbjct 179727 GCTTCTATTGAGATTGACTCGTTATTTGATGGCATTGATTTCTACACATCAATTACCCGT 179786 Query 475601 GCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAA 475660 ||| ||||| || | | |||||||||| | || ||||||| || || | Sbjct 179787 GCTCGCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAG 179846 Query 475661 GTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | ||| | ||| |||| || |||||| ||| | ||||||||||||| || ||||| Sbjct 179847 GCTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTTGGAGGC 179906 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTA 475780 ||||| | || || || || | | |||| | | |||||||| ||| || || Sbjct 179907 TCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTCTTTAATGGAAAAGAGCTA 179966 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 || |||| ||||||||||||||||||| |||||||| |||||||| || || |||||| Sbjct 179967 AACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAGGCTGCTATT 180026 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 || ||| | | ||| || | | | | | || |||| ||| | |||||| Sbjct 180027 CTAATGGGTGACAAATCCGAAAACGTGCAAGACCTGCTGCTGCTTGATGTAGCACCACTT 180086 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACA-GAAATACTCC 475959 || | ||| |||| || | ||| || | |||||| |||| | | | | || || | Sbjct 180087 TCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACT-GCCTTAATCAAACGTAACACAAC 180145 Query 475960 TATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 ||| || ||| || | | || |||| ||||| || || || | | ||| Sbjct 180146 TATTCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGACAACCAGAGTAGTGTGCT 180205 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 | ||| | | ||| ||||| ||| | || || || ||||| || || | || Sbjct 180206 GGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAATAATCTGCTGGGCAAGTT 180265 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || ||||||||| ||||| || | || || || |||||||| || || ||||| Sbjct 180266 TGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACGTTTGA 180325 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||||||||||||||||| || ||||||||||| Sbjct 180326 CATTGATGCAAATGGTATCCTCAATGTTACTGC 180358 Score = 179 bits (198), Expect = 2e-39 Identities = 376/553 (68%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || ||||| || || || || ||| || || | |||| ||| | || || Sbjct 178898 TGCCATAGGCATTGACTTGGGCACCACGTACTCCTGCGTCGGAGTTTTCCAACACGGGAA 178957 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || ||||| |||||||| || | || || || |||||| | ||||| Sbjct 178958 AGTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACGCCGAGCTATGTTGCCTTTAC 179017 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || || |||||||| || || | |||| || ||||| || Sbjct 179018 GGACACTGAACGCCTCATCGGAGATGCAGCCAAGAACCAAGTGGCTATGAATCCCAACAA 179077 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || || |||||||| || | | ||||| || || |||||||| | || || || || Sbjct 179078 CACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCAACGGTGCAGTC 179137 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| || |||||||| ||| | | | | || || || | || ||| Sbjct 179138 CGATATGAAGCACTGGCCTTTCCGTGTGGTGAGCGAAGCGGGGAAGCCCAAGGTACAAGT 179197 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | || | | |||| || || | || ||| ||||||| || ||||| || Sbjct 179198 CGAGTATAAGT--GTGAGGTCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 179255 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGA-TGCAGTAA 474743 |||||||||| ||| || ||| | || | || | |||| | || ||| |||| Sbjct 179256 ACCAAAATGAAGGAAATAGCCGAGG-CTTACTTGGGTCGCAAAGTC-CAGAGTGCTGTAA 179313 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || ||||| || ||||| || ||||| ||||| || |||||||| || | | Sbjct 179314 TTACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCA 179373 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || ||||||| ||||| || || || |||||||| || || || || || |||| |||| Sbjct 179374 TTACAGGTCTCAATGTATTGCGCATCATTAATGAGCCGACGGCTGCTGCCATTGCCTATG 179433 Query 474864 GTCTTGATAAGAA 474876 || | ||||| || Sbjct 179434 GTTTGGATAAAAA 179446 >seq21351 Length=128511 Score = 111 bits (122), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 11/193 (6%) Strand=Plus/Minus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 26069 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 26010 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 26009 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 25950 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | ||||| || || | Sbjct 25949 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTCATAGAAGAAAT 25894 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 25893 TGCCAGTGAATTT 25881 >seq21907 Length=118615 Score = 105 bits (116), Expect = 4e-17 Identities = 130/178 (73%), Gaps = 11/178 (6%) Strand=Plus/Minus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 87296 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 87237 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||||||||| |||||| Sbjct 87236 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAATAATTTGAAATCAAA 87177 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaa 80529 | ||||| |||||||||||||||||||||| | | ||||| || || Sbjct 87176 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTCATAGAAGAA 87123 >seq5700 Length=21585 Score = 102 bits (112), Expect = 5e-16 Identities = 138/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Minus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | |||| Sbjct 20934 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAG 20875 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 20874 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 20815 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | ||||| | || | Sbjct 20814 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTCATAGAGGAAAT 20759 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 20758 TGCCAGTGAATTT 20746 >seq23897 Length=295440 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| ||||| ||||| || || ||||||||||| || |||||||||||||| Sbjct 226636 GGCATTCCTCCAGCTCCAAGAGGTGTGCCACAAATTGAAGTCACCTTTGATATTGATGCC 226577 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || || ||| ||||| |||||| Sbjct 226576 AATGGCATCCTCAACGTTTCTGCTGTTGATAA 226545 >seq24389 Length=80689 Score = 87.8 bits (96), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 299107 TGCTTCTGAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGA 299166 ||| |||||| ||||||||||||| | | | ||| |||| |||||||||||||| || Sbjct 32560 TGCATCTGAACGGCAGATTAAAAAAGCATTTCATAAACTAGCAATGAAATATCATCCAGA 32501 Query 299167 CAGAAATAAAAGTCCTGAAGCGGAAGAAAAGTT 299199 || ||||||||| |||| ||| |||| ||| || Sbjct 32500 CAAAAATAAAAGCCCTGGAGCAGAAGCAAAATT 32468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266940267989684