Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq11981 228 9e-55 >seq11981 Length=166391 Score = 228 bits (252), Expect = 9e-55 Identities = 652/994 (66%), Gaps = 15/994 (2%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||| ||| | |||||| |||| ||| || | || || ||||| || || || | Sbjct 145266 TGTCTCGTAAATGTTCTTCCAAACACTGAATTGCAAAAGGATCAACATCAGTATCAAACT 145325 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||| || ||| ||| |||||| || ||||||| || || | Sbjct 145326 TGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGACTCCAAAGA 145382 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | ||| || || |||||||| ||||| |||| || || | || | Sbjct 145383 CACATACAGAACGGACGTGAACTCCATTGCAAGGGGGGTAAGGAGCACCCTTGGATACAT 145442 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||| |||||||||||||||| ||| || || | ||| ||||| || | Sbjct 145443 CCCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAATTGCATTCATATCGGAAACATCAT 145502 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 |||||| || | ||| |||||||| ||||| | || || ||||| | || ||||| Sbjct 145503 ATTTGT-CACTGGCGGAGACGGCACCAGGAACCTCAGGGATTCGCTGAACTGTTGCCCAT 145561 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| ||||| ||||| ||||| |||| |||||| || || | ||| || Sbjct 145562 AAGTATTCATCGGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAATTTTGCTA 145621 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | | | || | || | || ||||| || || || || ||||| Sbjct 145622 TTCTCTAATATATATTCCACAAACCTCCTACTAACAACAAAATAGGCACTTCCAGAGAAA 145681 Query 160464 ATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || ||| || | ||| || ||| | |||||| || ||||| ||| || | Sbjct 145682 ATGGGTGTGTTGAGAGGTGG-GTGCTGTTTGTCTATCCCTGTGTTTTTTACCTTGCCATC 145740 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 || | | | | ||||||||||| ||| |||| | ||||| |||||| || Sbjct 145741 AACTACTTCATAATGTTTCTTCCACCTCACCTCTTTGTTTGAAGGCATTTTTTCCGTTTC 145800 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || || || |||||| ||| | ||||| || || || || ||| || ||||||| Sbjct 145801 TAAGCTATTTTCACCGTTGAGGGCTTTCAACTTCTCCACTATTTCTTTATTGGTCTTGAT 145860 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 || || || ||||||| | || || | ||||||||| || | || | || Sbjct 145861 TGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCCTCCTATAGAG 145920 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 ||| ||||||| || | || || || || |||||||| || || |||||||| | || Sbjct 145921 ATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACACTACACTTTC 145980 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCC-A 160818 | || ||||| | ||||| |||| ||||| || | || || || | ||| | Sbjct 145981 CAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCTTTTACAGCTGCCAA 146040 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 |||||| || | |||| ||| || || | ||| || | ||| ||||| || | Sbjct 146041 GAAAGA----CTCTGGGGACTTTTTGTCAACATGAATGCAGTAAAAGTTTTGAGGAGCAT 146096 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 | |||| || || | ||||| | ||| | || ||||||| ||| || || || | Sbjct 146097 ATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATATG 146156 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGA 160998 | || ||||| || || || || | || || | | | | || || ||| |||| | Sbjct 146157 CAATGGGAAATTCTGTTTCTTCTTGGCTAAGAGGTTCCATAATATATTTCCGCTTCTTAA 146216 Query 160999 TAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| | ||||||| |||||||||||||| Sbjct 146217 TAAAGGAGGCACAATCAATTGTCATGTTGATATA 146250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577010802223080