Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq25442 87.8 4e-12 seq10558 86.0 1e-11 seq5028 86.0 1e-11 >seq25442 Length=71287 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | || || |||| |||| ||||| ||||||||||| | || Sbjct 26926 GATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCT 26867 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || || ||||| ||||| || || || || || || || | Sbjct 26866 CTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGT 26807 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | || || ||||| || |||||||| ||||| || || || | ||| ||||| Sbjct 26806 GTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAGATCTG 26747 Query 192534 CATTTT 192539 |||||| Sbjct 26746 CATTTT 26741 >seq10558 Length=413728 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 49866 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 49925 |||||| |||||| | ||| ||||||| |||| || || |||||||||||||||||| Sbjct 114583 TCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCTTTAGCCAAAATATTGATGCA 114524 Query 49926 AAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTAT 49972 ||| | ||||||||| || || || || |||||||||| ||| Sbjct 114523 AAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTAT 114477 >seq5028 Length=21598 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919 |||| |||||| ||||| | ||||||||||| |||||||| || ||||||||||| Sbjct 4556 ATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATG 4497 Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGC 49966 | ||||||| || ||| ||||| || || |||||| ||||| || Sbjct 4496 GCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984115679947050