Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq24053 174 2e-37 seq24556 170 2e-36 seq22408 165 1e-34 seq25174 161 1e-33 seq24985 161 1e-33 seq11057 156 5e-32 seq25428 104 3e-16 seq3026 104 3e-16 >seq24053 Length=88915 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||| |||||||||||||| | | || Sbjct 81873 GCTTGGCCAGCTCGCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 81932 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 81933 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 81992 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||| | Sbjct 81993 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCCGTGTCGGGAT 82052 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 82053 GGACCTGCTTCAGCACCTTGTAGA 82076 >seq24556 Length=84784 Score = 170 bits (188), Expect = 2e-36 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| || ||||| ||||| |||||||||||||| | | || Sbjct 214 GCTTGGCCAGCTCGCCGGGCAGGAGGAGGCGAACGGCCGTCTGGATCTCGCGAGAGGTGA 155 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| |||| ||| ||||| | ||||||| |||| | Sbjct 154 TGGTGGAGCGCTTGTTGTAGTGGGCCAAGCGGGAAGCCTCCCCGGCGATGCGCTCGAAGA 95 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 94 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 35 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 34 GGACCTGCTTGAGCACCTTGTAGA 11 Score = 147 bits (162), Expect = 3e-29 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| || ||||||||||| |||||||||||||| | | || Sbjct 84599 GCTTGGCCAGCTCGCCGGGCAGGAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 84658 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||| || ||||||| |||| | Sbjct 84659 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAAGCCTTGGCCGCGATGCGCTCGAAGA 84718 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 84719 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 84778 Query 1254523 GCACCT 1254528 | |||| Sbjct 84779 GGACCT 84784 Score = 123 bits (136), Expect = 3e-22 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||| ||||| ||| ||||||| ||||||| || | Sbjct 72732 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCAAA 72673 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 ||||||||||| || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 72672 GATGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGG 72613 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGA 1254546 ||| |||||||||||||||||||||| Sbjct 72612 GTGGACCTGCTTGAGCACCTTGTAGA 72587 Score = 86.0 bits (94), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||||| || |||||||||| ||| | |||| ||||||||| ||| ||| Sbjct 54347 ATGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGG 54406 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGA 1254546 || |||||||||||||||||||||| Sbjct 54407 TGGACCTGCTTGAGCACCTTGTAGA 54431 >seq22408 Length=330381 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||| |||||||||||||| | | || Sbjct 329372 GCTTGGCCAGCTCGCCTGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 329313 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||||| ||||||| |||| | Sbjct 329312 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCGAAGA 329253 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||| | Sbjct 329252 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGAT 329193 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 329192 GGACCTGCTTCAGCACCTTGTAGA 329169 >seq25174 Length=275035 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| |||| | || Sbjct 177144 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 177203 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| ||| ||||| | ||||||| |||| | Sbjct 177204 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 177263 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 177264 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 177323 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 177324 GGACCTGCTTCAGCACCTTGTAGA 177347 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| |||| | || Sbjct 189901 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 189842 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| ||| ||||| | ||||||| |||| | Sbjct 189841 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 189782 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 189781 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 189722 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 189721 GGACCTGCTTCAGCACCTTGTAGA 189698 >seq24985 Length=293342 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || |||||| |||| |||||||||||||| | | || Sbjct 45869 GCTTGGCCAGCTCACCCGGCAGGAGGAGGCGCCCGGCCGTCTGGATCTCGCGAGAGGTGA 45928 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| ||||| | ||||||| |||| | Sbjct 45929 TGGTGGAGCGCTTGTTGTAGTGGGCCAGACGGGAAGCCTCAGCCGCGATGCGCTCGAAGA 45988 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 45989 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCAGGTGTCGGGGT 46048 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||| ||||||| Sbjct 46049 GGACCTGCTTGAGCACATTGTAGA 46072 >seq11057 Length=8614 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||||||||| ||||||||||| || | | || Sbjct 4010 GCTTGGCCAGCTCACCAGGCAGGAGGAGGCGCACGGCTGTCTGGATCTCACGGGAGGTGA 4069 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| |||| ||| |||||| | ||||||| |||| | Sbjct 4070 TGGTGGAGCGCTTGTTGTAGTGGGCCAAGCGGGAGGCCTCAGCTGCGATGCGCTCGAAGA 4129 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 4130 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 4189 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||| |||||||||||||||| Sbjct 4190 GGACCTGTTTGAGCACCTTGTAGA 4213 >seq25428 Length=70394 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||||||||| |||||| || | | || |||||||||||||||||| | | Sbjct 13234 ACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTG 13293 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| ||||||||||| |||||||||||||| || ||||| |||| | | ||| | Sbjct 13294 CGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGACTCGATG 13353 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 13354 ATGGCGTACCACAGCTG 13370 Score = 100 bits (110), Expect = 3e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| |||||||| |||| || ||||| |||||||| || |||| | ||||||||| Sbjct 15453 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCCTCCTT 15512 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||| |||||| || |||||||| | || | |||||| |||||| ||||||||||| Sbjct 15513 CCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCCAGGGCTCCAGGTA 15572 Query 1628568 GCAGGCAAAGGCGCC 1628582 | ||| ||||| || Sbjct 15573 GATGGCGAAGGCCCC 15587 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || ||||| ||||| ||||| |||||||||||| ||||| | ||| || || Sbjct 6708 AACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGATTCA 6767 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 |||| ||||||||||| | ||| | ||||||||||||| | ||||| ||||| Sbjct 6768 TTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAG 6820 Score = 87.8 bits (96), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||| || || || |||||||||||||| ||||| | || |||||||| | Sbjct 17818 CGGCCACCCCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTCCTTCAGCGTGTCAT 17877 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||| ||||| |||| |||||||| | ||||||||| Sbjct 17878 AGATGCCTTCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCA 17920 >seq3026 Length=213726 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 74265 CGTCATCTCCTTCGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 74206 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| ||| ||||| || ||||| ||||||| |||||| |||||||| Sbjct 74205 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGGCACGGCGTCAACCGC 74154 Score = 87.8 bits (96), Expect = 2e-11 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 507724 CGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCA 507783 |||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 90044 CGTCACCACCCCCTACAACGCCGACTTTGACGGCGACGAGATGAACCTCCACCTGCCCCA 89985 Query 507784 GTC 507786 ||| Sbjct 89984 GTC 89982 Score = 87.8 bits (96), Expect = 2e-11 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 507724 CGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCA 507783 |||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 90482 CGTCACCACCCCCTACAACGCCGACTTTGACGGCGACGAGATGAACCTCCACCTGCCCCA 90423 Query 507784 GTC 507786 ||| Sbjct 90422 GTC 90420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104768925760911