Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25442 93.3 4e-14 seq27101 86.0 6e-12 seq25428 84.2 2e-11 >seq25442 Length=71287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || ||||| || || || || || || ||| | Sbjct 26744 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAAACCATCACCCTAGAGGTGGAGCCCAGC 26803 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 26804 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 26863 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | | || || || ||| Sbjct 26864 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAC 26923 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 26924 ATCCAGAAGGAGTCCACCCTCCAC 26947 >seq27101 Length=56424 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || || ||| | Sbjct 14488 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGC 14547 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || ||||| || || ||||| || Sbjct 14548 GACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCCGACCAG 14607 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || | ||||||||||||| || |||||||| || Sbjct 14608 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGA 14642 >seq25428 Length=70394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 138775 GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTG 138834 |||| || | ||| ||||| || || | ||||| || || ||| ||||| || ||| Sbjct 7787 GCCAGCTGGCAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATCTGTTGGTTG 7846 Query 138835 AGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGC 138894 |||| | |||| |||||||||| | || | ||| | | |||| ||||||||||| Sbjct 7847 AGCAGCTGCGCCTGGGCGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGG 7906 Query 138895 CCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA 138935 || ||||| || | |||| ||||| |||||| | || || Sbjct 7907 CCCTGCACCCCGATGCCGATGGGGCGGTGGCGCTGGTTGGA 7947 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || || | || || || || ||| |||||| ||||| | ||||| | | Sbjct 6702 ACCTGGAACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACC 6761 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCA 138622 ||||| ||||| ||||| ||||||||||||| || || |||||| ||||||| Sbjct 6762 GATTCATTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCA 6816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449735170095240