Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq24053 233 3e-55 seq22408 224 2e-52 seq24556 219 7e-51 seq11057 210 3e-48 seq25174 201 2e-45 seq24985 201 2e-45 seq25428 105 1e-16 seq3026 105 1e-16 >seq24053 Length=88915 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 81834 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGCA 81893 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 81894 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 81953 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 81954 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 82013 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||| || |||||||| |||||||||| Sbjct 82014 TGATGCTCATGGCCTTGGAGGAGATGCCCGTGTCGGGATGGACCTGCTTCAGCACCTTGT 82073 Query 1485710 AAAC 1485713 | || Sbjct 82074 AGAC 82077 >seq22408 Length=330381 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 329411 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCTGGCA 329352 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 329351 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 329292 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 329291 GAGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 329232 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| || |||||||| |||||||||| Sbjct 329231 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGATGGACCTGCTTCAGCACCTTGT 329172 Query 1485710 AAAC 1485713 | || Sbjct 329171 AGAC 329168 >seq24556 Length=84784 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 253 TGTACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 194 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||| | | ||| ||| ||||||||| | Sbjct 193 GGAGGAGGCGAACGGCCGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 134 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 133 GGGCCAAGCGGGAAGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 74 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct 73 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 14 Query 1485710 AAAC 1485713 | || Sbjct 13 AGAC 10 Score = 203 bits (224), Expect = 5e-46 Identities = 180/225 (80%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||||| |||| ||||||| |||||| ||| Sbjct 84560 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGTGTGCTTGGCCAGCTCGCCGGGCA 84619 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 84620 GGAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 84679 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 84680 GGGCCAGGCGGGAAGCCTTGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 84739 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1485694 |||| ||| | ||| ||||||||| ||||||||| |||| Sbjct 84740 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCT 84784 Score = 116 bits (128), Expect = 6e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 1485567 GATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGAT 1485626 ||| ||| ||||||||| | | ||||||||| ||||||| ||||||| || | Sbjct 72732 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCAAA 72673 Query 1485627 CATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 ||||||||||| || ||||||||||| ||| | ||| ||||||||| |||||| Sbjct 72672 GATGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGG 72613 Query 1485687 GTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||| |||||||||||||||||||| || Sbjct 72612 GTGGACCTGCTTGAGCACCTTGTAGAC 72586 >seq11057 Length=8614 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||| |||||| ||||||| || || ||| Sbjct 3971 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCACCAGGCA 4030 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| ||||||||||| |||| | ||| ||| ||||||||| | Sbjct 4031 GGAGGAGGCGCACGGCTGTCTGGATCTCACGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 4090 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 4091 GGGCCAAGCGGGAGGCCTCAGCTGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 4150 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| ||||| ||||||||||||| Sbjct 4151 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGGACCTGTTTGAGCACCTTGT 4210 Query 1485710 AAAC 1485713 | || Sbjct 4211 AGAC 4214 >seq25174 Length=275035 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || ||||||||| ||||||| || ||| ||| Sbjct 177105 TGTACTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 177164 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 177165 GCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 177224 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 177225 GGGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 177284 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 177285 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 177344 Query 1485710 AAAC 1485713 | || Sbjct 177345 AGAC 177348 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || ||||||||| ||||||| || ||| ||| Sbjct 189940 TGTACTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 189881 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 189880 GCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 189821 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 189820 GGGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 189761 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 189760 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 189701 Query 1485710 AAAC 1485713 | || Sbjct 189700 AGAC 189697 >seq24985 Length=293342 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 45830 TGTAGTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCACCCGGCA 45889 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||| |||| |||||||||||||| | | ||| ||| ||||||||| | Sbjct 45890 GGAGGAGGCGCCCGGCCGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 45949 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 45950 GGGCCAGACGGGAAGCCTCAGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 46009 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||||||||| |||||||||||||| |||| Sbjct 46010 TGATGCTCATGGCCTTGGAGGAGATGCAGGTGTCGGGGTGGACCTGCTTGAGCACATTGT 46069 Query 1485710 AAAC 1485713 | || Sbjct 46070 AGAC 46073 >seq25428 Length=70394 Score = 105 bits (116), Expect = 1e-16 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||||||||| |||||| || | ||||||||||||||||||||||||| | |||| Sbjct 13239 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTT 13298 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | ||||||||||| ||||||||||||| |||||||| |||| | | || |||||| Sbjct 13299 GCAGGCGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGACTCGATGATGGC 13358 Query 2071704 CGACCA 2071709 |||| Sbjct 13359 GTACCA 13364 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| || |||| ||||| || || |||| | ||||||||| ||| |||||| |||| Sbjct 15470 TCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCCTCCTTCCCGGTGTTCTTCTTCA 15529 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||||||| | || | || |||| |||||| |||||||||||| ||| ||||| || Sbjct 15530 GGTCGAGAAACTCAAAGATGTCGAAGTGCCAGGGCTCCAGGTAGATGGCGAAGGCCCC 15587 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCG 2069676 || || ||||| ||||| ||||| |||||||||||||| ||| | ||| || || Sbjct 6708 AACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGATTCA 6767 Query 2069677 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 |||| ||||||||||| | ||| | ||||||||||||| | ||||| || || Sbjct 6768 TTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAG 6820 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCGGTTGAGGCGACGCGCGCCGGCGCTCTCC 2070111 ||||| | |||||| ||||| ||||| ||||||| | |||| ||||||||| Sbjct 7811 GCCGCGTAGTAGATGGTCTCGAAGATCTGTTGGTTGAGCAGCTGCGCCTGGGCGCTCTCG 7870 Query 2070112 CACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGC 2070171 | || | | ||| | | || |||||||||||||||||||| |||| ||| || || Sbjct 7871 AAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACCCCGATGCCGATGGGG 7930 Query 2070172 CGGTGGCGCAGGTTCGAG 2070189 ||||||||| |||| ||| Sbjct 7931 CGGTGGCGCTGGTTGGAG 7948 >seq3026 Length=213726 Score = 105 bits (116), Expect = 1e-16 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 74265 CGTCATCTCCTTCGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 74206 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||||||||| || ||||| |||||||||||||| ||||||| Sbjct 74205 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGGCACGGCGTCAACCG 74155 Score = 87.8 bits (96), Expect = 3e-11 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 429664 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCG 429716 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 90033 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTCCACCTGCCCCAGTCG 89981 Score = 87.8 bits (96), Expect = 3e-11 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 429664 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCG 429716 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 90471 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTCCACCTGCCCCAGTCG 90419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913173983554637