Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5804 405 4e-107 seq21159 113 3e-19 seq22897 96.9 3e-14 seq21351 93.3 3e-13 seq12304 91.5 1e-12 seq23897 89.7 4e-12 seq27186 87.8 1e-11 >seq5804 Length=195880 Score = 405 bits (448), Expect = 4e-107 Identities = 1012/1518 (67%), Gaps = 28/1518 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 |||||| || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 180404 ATTAGTTATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAG 180345 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||| ||||| | ||||| || || |||||||| || || || | | ||||| Sbjct 180344 GATACCATTTGCATCAATGTCAAACGTCACCTCAATTTGGGGCACACCACGAGGTGCAGG 180285 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| || ||| || | ||| | ||||| |||||| || || || | || || Sbjct 180284 TGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTGGTCATGGCTCTCTC 180225 Query 281560 ACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 |||||| | | ||| | || | ||||| | || || |||||||| || || || | Sbjct 180224 ACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAATAGGTGGTGAAGG-T 180168 Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 180167 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGTTTGATTAAGGCAGTCATCACACCACC 180108 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736 ||| || || | ||| |||||||| || | ||||||| || | | | ||| | || Sbjct 180107 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGCAGGTCTTGCACGTT 180048 Query 281737 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 ||| | | ||| | |||||||| || || | ||||||||||||||| |||||||| Sbjct 180047 TTCGGATTTGTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTC 179988 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTC 281855 ||||||||| | ||| ||||| | ||| ||||| || || | ||| | || || | Sbjct 179987 ATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTT-TT 179929 Query 281856 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 | ||| || ||||||| ||| |||||||| | |||||||||| | |||| ||| | Sbjct 179928 GGATCTTGGGGATACGAGTTGAGCCTCCAACCAGAACAATTTCATTAATCTGTCCTTTGT 179869 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 | || || | ||| | | | || || || ||||||||| | | | || | || | Sbjct 179868 CTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAG 179809 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAA 282033 | || || || || ||| | ||| | ||| | || ||||||| || || || Sbjct 179808 CATTGAGCTCCTCAAAGCGAGCACGGGTA--ATTGATGTGTAGAAATCAATGCCATCAAA 179751 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 || || |||| ||||| | || || || || ||| || | |||||| || | ||| Sbjct 179750 TAACGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTC 179691 Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATAT 282151 ||| ||||| | || | ||| | || | ||| ||| | | || |||| Sbjct 179690 ACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATGC 179633 Query 282152 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 282209 || | |||||| || || |||| ||| | || | ||||| ||||| || || || | Sbjct 179632 TTGCGCTTGAATTCCTC--CACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCAC 179575 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | |||| ||| | |||| | | |||| || | |||||||||| | ||||| Sbjct 179574 CCAAATGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAA 179515 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTT 282323 | ||||||| || |||||||||| ||||| || || |||||| | | || Sbjct 179514 TGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTC 179455 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 || |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 179454 TGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCCGTCGGCTCATTAATGATGC 179395 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| ||||| ||||| | ||| | || |||||||| |||||||| | ||| || || | Sbjct 179394 GCAATACATTGAGACCTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCAT 179335 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 | || |||||||| |||||||| || ||| |||| |||| || | ||||| Sbjct 179334 TGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCGACCCAAGTAAGCCTCG 179276 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 ||| ||| |||||||| | || | ||| || ||||||| ||| ||| | | |||| Sbjct 179275 GCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGGTCTTG 179216 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 ||| | ||| |||| | | || || | | | | || || Sbjct 179215 ACCTCACACTTATACTCGACTTGTACCTTGGGCTTCCCCGCTTCGCTCACCACACGGAAA 179156 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||| | |||||||| || || || || ||||| ||| | | ||||| | || Sbjct 179155 GGCCAGTGCTTCATATCGGACTGCACCGTTGAGTCATCAAATTTGCGGCCAATGAGACGC 179096 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || |||||||| || || ||| | ||||| | || |||| | |||||||||||||| Sbjct 179095 TTGGCATCAAAGATGGTGTTGTTGGGATTCATAGCCACTTGGTTCTTGGCTGCATCTCCG 179036 Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 || || |||| || || ||||| | |||||| || || ||||| || ||||| || Sbjct 179035 ATGAGGCGTTCAGTGTCCGTAAAGGCAACATAGCTCGGCGTAGTGCGGTTGCCTTGGTCG 178976 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862 || || ||||| || ||||| || | ||| | || || || || | || || || Sbjct 178975 TTGGCGATAATCTCCACTTTCCCGTGTTGGAAAACTCCGACGCAGGAGTACGTGGTGCCC 178916 Query 282863 AAATCAATACCAATAGCA 282880 || ||||| || || ||| Sbjct 178915 AAGTCAATGCCTATGGCA 178898 >seq21159 Length=141513 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| ||||||||||||| || || || || |||||||| || || | | |||| Sbjct 70565 TTTTTATCCAGACCATACGCAATGGCTGCCGCTGTGGGTTCATTGATGATGCGAAGAACA 70624 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | || |||||||| |||||||| | || || ||||||||||| Sbjct 70625 TTCAGGCCAGCAATGGTGCCGGCATCTTTGGTGGCTTGCCGCTGGGAGTCGTTAAAATAA 70684 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || || || |||| Sbjct 70685 GCTGGGACGGTGATTACTGCAT 70706 >seq22897 Length=314272 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||||||| Sbjct 150430 AACTGCACACTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 150371 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | || || || | | |||||| || ||||| ||||||||||| |||| || Sbjct 150370 GGAGTTGTGGGTAGGGACAAATTTGGAGTATTTCCACTGCGAGGAAAACTTCTGAACGTA 150311 Query 400414 AGGGATGC 400421 |||| || Sbjct 150310 CGGGAAGC 150303 >seq21351 Length=128511 Score = 93.3 bits (102), Expect = 3e-13 Identities = 136/192 (71%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 1079027 AAGAATCATTGAATTAGAAACGTATCCAAAATTTTCGTATTGTTTCATTGCACACGACAA 1079086 ||| | ||| ||||||| || | |||| | ||| | |||||| ||| | || || Sbjct 26069 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 26010 Query 1079087 ATTAATCAAATTCCAAGCAATAATTCCGGGTCTACCATTAAAAAACAGTTTCAAATCA-- 1079144 |||||||||| |||| | | |||||| |||| ||||||||||||| ||| |||||| Sbjct 26009 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 25950 Query 1079145 ----GTTCCAAATATTTCAGGATTAAATTCAATACCCATAACAATATCATAAAATAATTT 1079200 |||| || | |||||||||||||| ||||| | | ||||| || || || Sbjct 25949 CCACTTTCCCAAGCGT---GGATTAAATTCAATTCCCATCATGAAGTCATAGAAGAAATT 25893 Query 1079201 TCCTGTAAATTT 1079212 || || ||||| Sbjct 25892 GCCAGTGAATTT 25881 >seq12304 Length=164263 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||||| || ||||||||||| || ||| | || ||| | ||||| | | Sbjct 92593 TGTACATTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTAGGT 92534 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||||||||||||||| ||||| ||||| ||||| || |||||| | | |||||| | Sbjct 92533 GTTATTGGAAGAGATAGATATGGGGTTTTTCCACTCAGGGGAAAAATGCTTAATGTTCGT 92474 Query 400417 GATGC 400421 || || Sbjct 92473 GAGGC 92469 >seq23897 Length=295440 Score = 89.7 bits (98), Expect = 4e-12 Identities = 221/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || || ||||||||||| || || | | | || |||| ||| || ||||| Sbjct 227693 GCACCGTAGGCTACAGCTTCATCGGGGTTGATGCTCTTGTTGAGTTCTTTGCCGTTGAAG 227752 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| ||| |||| ||| | ||| || || || | || || ||||| | ||||| Sbjct 227753 AAATCCTGAAGGAGTT-TCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGCACAAT 227811 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || |||||||| ||||||||||| || | |||| || |||| || ||||| || || Sbjct 227812 ATCGTGCACCTGAGATTTATCCAGCTTGGCATCCCGTAGCGCTTTCTCCACGGGGTCCAG 227871 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | |||||||| | || |||||||| ||||| || || || | Sbjct 227872 TGTGCCGCGGAACAAGTCGGCGTTCAGCTCTTCGAAGCGAGCTCGGGT--GATGGAAGTG 227929 Query 282015 TA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || |||| || || || ||| || |||| |||||| | | ||||| ||| ||| Sbjct 227930 TAGAAATCGATGCCCTCATACAGGGAGTCAATTTCAATACTGGCCTGAGTGCTAGAGGAT 227989 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGT 282102 || | ||||| || || || || || || Sbjct 227990 AGGGTGCGTTTCGCCCGCTCGCAGGCGGT 228018 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| ||||| || ||||| || |||||||||| | ||| Sbjct 228377 TTTTTGTCTAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCGTTAATAATTCGAAGCACA 228436 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 228437 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAA 228496 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || | || |||| ||| || Sbjct 228497 GCTGGGACTGTGACCACAGCATTTGTAAC 228525 >seq27186 Length=52555 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 18925 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 18866 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 18865 CTCTCAAAACATTCAATCCAGCAATCTGTCCAGCATCTTTAGTGGC 18820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739212366759558