Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq24219 95.1 1e-14 >seq24219 Length=289374 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 21121 TTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACT 21180 || ||| || ||||| || | || ||||| | ||| | |||||| |||| |||| || Sbjct 101121 TTGTAGTATATGGGGACCAACTTGTGATGGTCTTGATCGTATTGTTGAGCGTTGTGGCCT 101062 Query 21181 GCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGT 21240 ||||| ||||| || || || ||| | | |||||||||||||| || || | || | Sbjct 101061 ACCAGAACTTCAGGTTGGGGATTGGATGTTGTTTGAAAACATGGGAGCCTATA-CTGTGG 101003 Query 21241 CAGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 ||||| |||| ||||| || || || | || |||| || |||||||| || ||| Sbjct 101002 CAGCTGCTTCTACCTTCAATGGATTTCAAAGGCCAACAATACACTATGTAATGTCA 100947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463378242655440