Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25442 136 8e-27 seq5893 132 9e-26 seq27101 127 4e-24 >seq25442 Length=71287 Score = 136 bits (150), Expect = 8e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || ||||| || || || ||||| ||| | | || ||||| || || Sbjct 26947 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTG 26888 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| ||||||||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 26887 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTT 26828 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || ||||| || || | || || || || | || || || || || || Sbjct 26827 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGT 26768 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| ||||| ||||||||| Sbjct 26767 CAAGGTCTTCACAAAGATCTGCATT 26743 >seq5893 Length=194688 Score = 132 bits (146), Expect = 9e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| |||| |||||||||||||| ||||| ||||| || || || | || || | Sbjct 56691 GATAGCAGGAGCTTTATGGTGGTACTACATATCCAAAGGGATTGAGTATCTGGACACAAT 56750 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 || ||||| || || || || || ||||| | || ||| | ||||| ||||| ||||| Sbjct 56751 ATTCTTCATCCTAAGAAAGAAATTCAATCAAATCAGCTTTCTTCACGTCTATCACCATTT 56810 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 ||||||||||||||| | ||| | ||||| || ||| |||| ||||| |||| Sbjct 56811 CACTATGTTTACTTTATGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACAAG 56863 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||||||||| |||||||| ||||| | || || |||||| ||||||| |||||||| Sbjct 58639 AGCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTACCTCTATTATGG 58698 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| || | ||| | ||||| | |||||||| || || | || || Sbjct 58699 ACTAGCTGCCTGTGGCCCAAAGTTCCACAAGTACCTTTGGTGGAAACGATACTTGACCAT 58758 Query 60430 AATGCAATT 60438 ||||||||| Sbjct 58759 AATGCAATT 58767 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || ||||| ||||| || ||||| || ||||| Sbjct 61040 CAGTTCCATGTGACTATTGGCCACACTGCCATGTCTATTTATATTGATTGCCCCTTTCCT 61099 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| | | ||||| || | |||||||||||| Sbjct 61100 AAATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTGTTCTGTTTGGTAAC 61159 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||| | | | |||||||||| Sbjct 61160 TTCTACTATCGGACATACAAGA 61181 >seq27101 Length=56424 Score = 127 bits (140), Expect = 4e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || || || || || || || || ||||||||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || ||||| ||||| || || | || || || |||| ||| || Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 ||||| || ||||| ||||| ||||| ||||||||| || ||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTTTTTAT 14480 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| ||| ||||| | || ||||| || |||||||| || || || ||||| Sbjct 16201 CCTCCTCTCAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 16142 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||| ||||| || || || || || ||||| Sbjct 16141 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGA 16082 Query 82704 ATTCCTTCCTTATC 82717 || ||||||||||| Sbjct 16081 ATGCCTTCCTTATC 16068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981463861651337