Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5893 147 4e-30 >seq5893 Length=194688 Score = 147 bits (162), Expect = 4e-30 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| |||||||||||||| ||||| |||||||| || || | || ||| | Sbjct 56691 GATAGCAGGAGCTTTATGGTGGTACTACATATCCAAAGGGATTGAGTATCTGGACACAAT 56750 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| || || || || || ||||| | |||||||| ||||| ||||| ||||| Sbjct 56751 ATTCTTCATCCTAAGAAAGAAATTCAATCAAATCAGCTTTCTTCACGTCTATCACCATTT 56810 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||||||||||||| | ||| | || || || ||| |||||||||| || Sbjct 56811 CACTATGTTTACTTTATGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 56861 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732 || |||||| | |||| || || || || ||||| ||||| || |||||||| ||||| Sbjct 61040 CAGTTCCATGTGACTATTGGCCACACTGCCATGTCTATTTATATTGATTGCCCCTTTCCT 61099 Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792 ||||||| ||| ||| || || ||||| | | ||||| || | ||||||||||| Sbjct 61100 AAATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTGTTCTGTTTGGTAAC 61159 Query 58793 TTCTATTTTAGAACATACAAGA 58814 ||||| | | | |||||||||| Sbjct 61160 TTCTACTATCGGACATACAAGA 61181 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 |||||||| || ||||| ||||| |||| || |||||| ||||||| |||||||| Sbjct 58640 GCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTACCTCTATTATGGA 58699 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | | ||| | ||||| | |||||||| || ||| | || ||| Sbjct 58700 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTACCTTTGGTGGAAACGATACTTGACCATA 58759 Query 58661 ATGCAATTGGTA 58672 |||||||| ||| Sbjct 58760 ATGCAATTAGTA 58771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903085034678880