Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10]
28,883 sequences; 1,532,390,814 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq25442 127 2e-24
seq27101 113 4e-20
seq25428 107 2e-18
seq8970 84.2 2e-11
>seq25442
Length=71287
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| || | ||| | | | || || ||||| ||||
Sbjct 26941 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 26883
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||| ||||||||| ||||| ||||||||||| || |||||| ||
Sbjct 26882 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 26823
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||||| |||||| |||||||||| || | ||||| |||||| || |||| |
Sbjct 26822 TGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGG 26763
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 26762 TCTTCACAAAGATCTGCAT 26744
>seq27101
Length=56424
Score = 113 bits (124), Expect = 4e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||||||||| || | || |||| |||||||||||| || |||||||||||
Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | ||||| |||||| |||||||||| || | |||| |
Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || |||| || || || || ||||||||
Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 14488
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || ||||| || | ||| | | | || || |||||||||||
Sbjct 16171 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 16113
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567
||| | || |||| ||||||||||||||| ||||||||||| ||
Sbjct 16112 AGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATC 16068
>seq25428
Length=70394
Score = 107 bits (118), Expect = 2e-18
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909
||| ||| || | ||||||| || ||||||| ||| || |||||||| ||||| |||
Sbjct 13212 CTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCC 13271
Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
|| ||||| || |||||||||| |||||| ||||||||||| |||||||| ||
Sbjct 13272 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 13325
>seq8970
Length=181473
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 133557 CCTTCCTTGTCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615
||||||||||| ||| ||||| ||||| | |||| ||||| | |||||||| ||
Sbjct 140735 CCTTCCTTGTC-CTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTC 140793
Query 133616 GACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| |||||||||||| || ||||| || |||||||||||
Sbjct 140794 AAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 140838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483246266962920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |