Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25442 127 2e-24 seq27101 113 4e-20 seq25428 107 2e-18 seq8970 84.2 2e-11 >seq25442 Length=71287 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || || ||||| |||| Sbjct 26941 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 26883 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| ||||||||||| || |||||| || Sbjct 26882 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 26823 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||||||||| || | ||||| |||||| || |||| | Sbjct 26822 TGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGG 26763 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 26762 TCTTCACAAAGATCTGCAT 26744 >seq27101 Length=56424 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| |||||||||||| || ||||||||||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||||| |||||| |||||||||| || | |||| | Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| || || || || |||||||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 14488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || | ||| | | | || || ||||||||||| Sbjct 16171 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 16113 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || |||| ||||||||||||||| ||||||||||| || Sbjct 16112 AGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATC 16068 >seq25428 Length=70394 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| ||| || | ||||||| || ||||||| ||| || |||||||| ||||| ||| Sbjct 13212 CTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCC 13271 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || ||||| || |||||||||| |||||| ||||||||||| |||||||| || Sbjct 13272 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 13325 >seq8970 Length=181473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 ||||||||||| ||| ||||| ||||| | |||| ||||| | |||||||| || Sbjct 140735 CCTTCCTTGTC-CTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTC 140793 Query 133616 GACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| |||||||||||| || ||||| || ||||||||||| Sbjct 140794 AAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 140838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483246266962920