Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq11981 154 2e-32 >seq11981 Length=166391 Score = 154 bits (170), Expect = 2e-32 Identities = 556/863 (64%), Gaps = 19/863 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||||| ||| || ||||| | | || || Sbjct 145318 ATCAAACTTGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGAC 145374 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || ||||| || || |||| || || || | || || | Sbjct 145375 TCCAAAGACACATACAGAACGGACGTGAACTCCATTGCAAGGGGGGTAAGGAGCACCCTT 145434 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||||||||| |||| |||||||| || |||| | || || | ||| ||||| Sbjct 145435 GGATACATCCCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAATTGCATTCATATCGGA 145494 Query 162300 GGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || || |||| ||||| ||| ||||| |||||||| | || | || ||| | | Sbjct 145495 AACATCATATTTGT-CACTGGCGGAGACGGCACCAGGAACCTCAGGGATTCGCTGAACTG 145553 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| | || ||| || ||||| || || || || | ||| || || || | | Sbjct 145554 TTGCCCATAAGTATTCATCGGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAA 145613 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | ||| | || || || || | ||| | |||| ||| || || || | Sbjct 145614 TTTTGCTATTCTCTAATATATATTCCACAAACCTCCTACTAACAACAAAATAGGCACTTC 145673 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || | |||| || | ||| ||| ||| ||||||| || ||||| |||| Sbjct 145674 CAGAGAAAATGGGTGTGTTGAGAGGTGGGTGCTGTTTGTCTATCCCTGTGTTTTTTACCT 145733 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG---GT 162595 | || || || || | | ||| ||||||| || |||| || | || || | Sbjct 145734 TGCCATCAACTACTTCATAATGTTTCTTCCACCTCACC-TCTT--TGTTTGAAGGCATTT 145790 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || |||| || || ||| | ||| |||| || ||| || ||| || Sbjct 145791 TTTCCGTTTCTAAGCTATTTTCACCGTTGAGGGCTTTCAACTTCTCCACTATTTCTTTAT 145850 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | || || || | ||||||||||| || | || ||||| | || | Sbjct 145851 TGGTCTTGATTGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCC 145910 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | || ||||||| | ||||| || || || || || || ||||| || || |||| Sbjct 145911 TCCTATAGAGATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACA 145970 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || || ||||| |||| | |||||||| | ||||| || | ||||| | | Sbjct 145971 CTACACTTTCCAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCTTTTA 146030 Query 162836 C----GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 | | | || ||| | ||| | || | || || || | |||||| | || Sbjct 146031 CAGCTGCCAAGAAAGACTCTGGGGAC----TTTTTGTCAACATGAATGCAGTAAAAGTTT 146086 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || || |||| ||||| | |||||| | ||| | || ||||| | |||| Sbjct 146087 TGAGGAGCATATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACT 146146 Query 162952 ATAGAATACGCTATGGGGAACTC 162974 || ||||| || ||||| || || Sbjct 146147 ATTGAATATGCAATGGGAAATTC 146169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578223164356800