Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10]
28,883 sequences; 1,532,390,814 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq27364 107 6e-20
seq27908 98.7 3e-17
seq25442 98.7 3e-17
seq24556 98.7 3e-17
seq11084 86.0 2e-13
>seq27364
Length=54557
Score = 107 bits (118), Expect = 6e-20
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 47457 AAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 47398
Query 2833 GCTT 2836
||||
Sbjct 47397 GCTT 47394
Score = 105 bits (116), Expect = 2e-19
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 49670 GCCGAAGTAGCTCAGGTGGGAGAGCATTAGACTGAATATCTAAAGGTCCCTGGTTCAACC 49611
Query 2829 CCGGGCTT 2836
| ||||||
Sbjct 49610 CTGGGCTT 49603
>seq27908
Length=244688
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 108942 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 108883
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 108882 CCGGGTTTCGGC 108871
>seq25442
Length=71287
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 24073 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 24132
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 24133 CCGGGTTTCGGC 24144
>seq24556
Length=84784
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 57644 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 57703
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 57704 CCGGGTTTCGGC 57715
>seq11084
Length=8971
Score = 86.0 bits (94), Expect = 2e-13
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829
|| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 2030 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGTTTCGACCC 1974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15844592987535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |