Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq27364 107 6e-20 seq27908 98.7 3e-17 seq25442 98.7 3e-17 seq24556 98.7 3e-17 seq11084 86.0 2e-13 >seq27364 Length=54557 Score = 107 bits (118), Expect = 6e-20 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 47457 AAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 47398 Query 2833 GCTT 2836 |||| Sbjct 47397 GCTT 47394 Score = 105 bits (116), Expect = 2e-19 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 49670 GCCGAAGTAGCTCAGGTGGGAGAGCATTAGACTGAATATCTAAAGGTCCCTGGTTCAACC 49611 Query 2829 CCGGGCTT 2836 | |||||| Sbjct 49610 CTGGGCTT 49603 >seq27908 Length=244688 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 108942 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 108883 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 108882 CCGGGTTTCGGC 108871 >seq25442 Length=71287 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 24073 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 24132 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 24133 CCGGGTTTCGGC 24144 >seq24556 Length=84784 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 57644 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 57703 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 57704 CCGGGTTTCGGC 57715 >seq11084 Length=8971 Score = 86.0 bits (94), Expect = 2e-13 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 || |||||||||||||||||| |||||||||||||||||||||||||| ||| |||| Sbjct 2030 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGTTTCGACCC 1974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844592987535