Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq24556 192 8e-43 seq24053 192 8e-43 seq22408 188 1e-41 seq24985 179 5e-39 seq11057 174 2e-37 seq25174 170 3e-36 seq25428 107 3e-17 seq3026 89.7 7e-12 >seq24556 Length=84784 Score = 192 bits (212), Expect = 8e-43 Identities = 182/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 11 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 64 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | ||||| | Sbjct 65 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCTTCCC 124 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 || |||| | || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 125 GCTTGGCCCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACGGCCGTTC 184 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 185 GCCTCCTCCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 235 Score = 167 bits (184), Expect = 3e-35 Identities = 148/185 (80%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| ||||||||||| || ||||||||||| |||| ||||||| Sbjct 84762 CTCCTCCAAGGCCATGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGC 84703 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 || |||| |||||||| | || |||||||||| ||| ||| | | |||||||| Sbjct 84702 GGCCAAGGCTTCCCGCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGAT 84643 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||| ||||||||||| || ||| |||||| ||||||| |||| ||||||||||||| Sbjct 84642 CCAGACGGCCGTGCGCCTCCTCCTGCCCGGCGAGCTGGCCAAGCACACCGTCTCCGAGGG 84583 Query 725138 CACCA 725142 ||||| Sbjct 84582 CACCA 84578 Score = 109 bits (120), Expect = 8e-18 Identities = 116/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 72587 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 72640 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||||| ||||||| | Sbjct 72641 TGAGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCGGCCGAGGCTTCCC 72700 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATC 725063 ||||||| | || |||||||||| ||| ||| Sbjct 72701 GCCTGGCTCACTACAACAAGCGCTCCACCATC 72732 >seq24053 Length=88915 Score = 192 bits (212), Expect = 8e-43 Identities = 182/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| || ||| || || |||| ||| |||| ||| Sbjct 82076 TCTACAAGGTGCTGAAGCAGGTCCATCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 82023 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| |||||||| | Sbjct 82022 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCC 81963 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||||| Sbjct 81962 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTGC 81903 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 81902 GCCTCCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 81852 >seq22408 Length=330381 Score = 188 bits (208), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| || ||| |||| |||| ||| |||| ||| Sbjct 329169 TCTACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCCTCCAAGGCCA 329222 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| ||||||| | Sbjct 329223 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCTTCCC 329282 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||||| Sbjct 329283 GCCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTGC 329342 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 329343 GCCTCCTGCTGCCAGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 329393 >seq24985 Length=293342 Score = 179 bits (198), Expect = 5e-39 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| |||||||||||||| |||||| ||| || |||| ||| |||| ||| Sbjct 46072 TCTACAATGTGCTCAAGCAGGTCCACCCCGACACC--TG---CATC-TCCTCCAAGGCCA 46019 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | ||||| | Sbjct 46018 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCTGAGGCTTCCC 45959 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | || |||||||||| ||| ||| | | |||||||||||||| |||| || Sbjct 45958 GTCTGGCCCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACGGCCGGGC 45899 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 45898 GCCTCCTCCTGCCGGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 45848 >seq11057 Length=8614 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||| ||||| ||||| |||| |||| ||| |||| ||| Sbjct 4213 TCTACAAGGTGCTCAAACAGGTCCACCCGGACACCGG-----CATC-TCCTCCAAGGCCA 4160 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 4159 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCAGCTGAGGCCTCCC 4100 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 || |||| | || |||||||||| ||| ||| | | || ||||||||||| ||||||| Sbjct 4099 GCTTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGTGAGATCCAGACAGCCGTGC 4040 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| |||||| |||||||||||||||| Sbjct 4039 GCCTCCTCCTGCCTGGTGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 3989 >seq25174 Length=275035 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 177347 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 177294 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | ||||| | Sbjct 177293 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCC 177234 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| || ||| | |||| ||||||||||| ||||||| Sbjct 177233 GCCTGGCCCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 177174 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || || ||||||| Sbjct 177173 GCCTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAAGGCACCA 177123 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 189698 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 189751 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | ||||| | Sbjct 189752 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCC 189811 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| || ||| | |||| ||||||||||| ||||||| Sbjct 189812 GCCTGGCCCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 189871 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || || ||||||| Sbjct 189872 GCCTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAAGGCACCA 189922 >seq25428 Length=70394 Score = 107 bits (118), Expect = 3e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | ||||| || |||||||||||| ||||| Sbjct 13370 CAGCTGTGGTACGCCATCATCGAGTCTCAGACGGAGACGGGGACGCCCTACATGCTCTAC 13311 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 ||||||||| ||||| | ||||||||||||||||||||||||| | || | ||| Sbjct 13310 AAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 13252 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| ||||||||||| || Sbjct 13251 CCTCTGCACCGAGATTGT 13234 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 262936 CTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995 || ||||| | ||||||||||||| | ||| | ||||||||||| |||| || || | Sbjct 6817 CTGGTGGCCCCCATGCCCACGGCCTCCACGGCTCAGATCCTGGGGAACAATGAATCGGTG 6758 Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 ||| | ||| |||||||||||||| ||||| ||||| ||||| || || Sbjct 6757 GAGCCCTACACCAGCAACATCTACACCCGCCGGGTGCTGTCGGGGGAGTT 6708 >seq3026 Length=213726 Score = 89.7 bits (98), Expect = 7e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1813105 GCGGTTAAAGCCGTGCCGCGTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGT 1813164 |||||| | |||||||||||||| ||||| || ||||| || |||||||||| Sbjct 74154 GCGGTTGACGCCGTGCCGCGTGATGGCCATCAAGTGCCCGCGACAGGTCATGGTGTCGCA 74213 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 | ||| || |||||||| | |||||| |||| |||||| |||||||| ||| Sbjct 74214 GAGCAGGGCCAAGTGGCGATAGTTGACGTAGGAGCCGTCGAAGGAGATGACG 74265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175025381563046