Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10558 138 2e-27 seq5028 116 5e-21 >seq10558 Length=413728 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || |||||||| || ||||| ||||||||||| || || | Sbjct 114603 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCT 114544 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| | |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 114543 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 114484 Query 39759 CAAC 39762 | || Sbjct 114483 CTAC 114480 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 112718 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 112659 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 112658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 112613 >seq5028 Length=21598 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || || || || ||||||| || | ||| ||| Sbjct 4568 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 4509 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||||||||| ||||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 4508 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 4449 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 4448 ACCACTCTTTCACC 4435 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 39275 AAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGTGACATAACTCCCATTTTTTGG 39331 |||||| ||||||||| ||| | ||||| | |||| ||||||||| | | | ||| Sbjct 8528 AAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTTGA 8469 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 ||||| ||| | |||| || ||||| ||||| ||||||| || || ||||||||| Sbjct 8468 TATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCATG 8409 Query 39392 AAATCAAACGGATT 39405 || ||||| || || Sbjct 8408 AAGTCAAAAGGGTT 8395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686660800164120