Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25602 105 5e-18 seq10558 105 5e-18 seq5028 100 2e-16 >seq25602 Length=68118 Score = 105 bits (116), Expect = 5e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||||||| ||| ||||| ||||| || ||||| || ||||| | || || ||| Sbjct 8889 TGCCAGTTTTACATTTTAAATGGGGAACTCTCTTGTCAGTTATATCAGCGTTCTGGAGAC 8948 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 |||||||| || || ||||| |||||||| |||||| | || || || | |||||||| Sbjct 8949 ATGGGACTGGGTGTACCGTTCAACATAGCTAGTTATTCACTTCTTACTTCAATGATTGCC 9008 Query 41196 CACGTTAC 41203 || ||||| Sbjct 9009 CATGTTAC 9016 >seq10558 Length=413728 Score = 105 bits (116), Expect = 5e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| ||||| Sbjct 105828 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCG 105887 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 105888 TCATTCTGGACAGCGGAAGAGGT 105910 Score = 100 bits (110), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || ||||||||||||| ||||| |||||||| Sbjct 116648 AATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACCAACTTCTTTGAAAAG 116707 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGT------GACAATAAATTT 44608 || || ||||||||||| | ||||| | |||| ||||| || ||| ||| Sbjct 116708 CGTGTAGGAGAATATCAAAGGATGGGTG---TGATGTCAAGTCCTGCAGATAATTCATTC 116764 Query 44609 ACTACGGATGAAGATTTCTAA 44629 ||| ||||| |||||||||| Sbjct 116765 ACTTTGGATGCAGATTTCTAA 116785 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 114468 GGTGAACGTATAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 114527 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||||||| |||||||||||||| | ||||| || | || ||||| |||||| | Sbjct 114528 TCAATATTTTGGCTAAAGAAACGAGGTCTAATGCCCGGACTTACTTTTTCTAATGAGCTG 114587 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 114588 ATTAGTAGAGATGA 114601 >seq5028 Length=21598 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||||||| || ||||| ||||| ||||| || | ||||||||| Sbjct 2443 CAAGAAGTGCAGGTCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 2502 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| || ||||||||| | | ||||| || |||||||||||| Sbjct 2503 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACATCAAAGAT 2550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || |||||||| | ||| ||||| || ||||| || || | ||||| Sbjct 4435 GGTGAAAGAGTGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCA 4494 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| || ||||| || | || || || ||||| | Sbjct 4495 GCCATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAATGAACTT 4554 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 4555 ATTAGCAGAGATGAAG 4570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397316090892415