Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25428 95.1 1e-14 >seq25428 Length=70394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 79370 TCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAAC 79429 |||| ||| | ||||||||||||||||||||| || || ||||||||| ||| | Sbjct 15440 TCTCCACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCC 15499 Query 79430 GCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCC 79489 | |||||| | || |||| ||| |||||||| || | ||||||| ||||| Sbjct 15500 TCTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCC 15559 Query 79490 ACGGCTCCAGATAGATGGCGAA 79511 | |||||||| ||||||||||| Sbjct 15560 AGGGCTCCAGGTAGATGGCGAA 15581 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 ||||||||||||| | ||||| |||||||||||| ||| ||||||||||||||| || Sbjct 13259 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCA 13318 Query 79187 TGTACGGCGTCCCGGTCTC 79205 |||| |||||||| ||||| Sbjct 13319 TGTAGGGCGTCCCCGTCTC 13337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 19271 ATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCC 19330 |||||||| |||||||| || |||||||| || ||||| ||||| ||||| | ||||||| Sbjct 17905 ATGAAGGACGACAGCATCGAAGGCATCTATGACACGCTGAAGGACTGCGCCCTCATCTCC 17846 Query 19331 AAGTGGTCCGGGGGTATCGGG 19351 |||| | ||||| |||||| Sbjct 17845 AAGTCTGCGGGGGGAATCGGG 17825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| ||||| | ||||||||||| | ||||| ||||| ||||| || |||||||| Sbjct 17826 CCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTCCTTCAGCGTGTCATAGATGCCT 17885 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA 79754 ||||| |||||||||||| || || |||||||| || Sbjct 17886 TCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCAGCTGGA 17926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548326761977520