Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5028 89.7 6e-13 seq25428 86.0 7e-12 seq22897 86.0 7e-12 seq12304 82.4 8e-11 >seq5028 Length=21598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| || || | |||||| ||||| | || | ||||| Sbjct 4570 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 4511 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | |||||| ||||| || | |||| ||||||||| ||||||||| ||||| | Sbjct 4510 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 4451 Query 74890 CGAC 74893 | || Sbjct 4450 CAAC 4447 >seq25428 Length=70394 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||| | |||||||||||||| ||||| |||||| |||||| | ||||||||||| ||| Sbjct 15587 GGGGCCTTCGCCATCTACCTGGAGCCCTGGCACTTCGACATCTTTGAGTTTCTCGACCTG 15528 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGAT 53682 ||| || | || ||| | | ||| ||||| || ||| || || ||||| Sbjct 15527 AAGAAGAACACCGGGAAGGAGGAGCAGAGGGCCCGGGACCTCTTCTAC-GCGCTCTGGAT 15469 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 ||||||||||||||| || |||||||| Sbjct 15468 CCCGGACCTCTTCATGAAACGGGTGGAGA 15440 >seq22897 Length=314272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| |||| | ||| || || || || ||||| ||||| ||||||||||| Sbjct 132336 GTAAAGATATATCTAGGGCTTGCAGCGTCTTTTCCACCATGCAGCCTAGTTCCAAACTGA 132395 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | | Sbjct 132396 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 132455 Query 152149 ATCGT 152153 || || Sbjct 132456 ATAGT 132460 >seq12304 Length=164263 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||| ||| ||| | ||||| || || Sbjct 85146 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCGCCATGAAGCCTAGTACCAAACTGA 85205 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | | || || || |||||||| ||||||||||| ||| Sbjct 85206 CCAATAGGCTGTAGCAAGCTGACATTATTACTTCCTACAAAGTTCTGAGCCAAGTTTACA 85265 Query 117425 ATCGT 117429 || || Sbjct 85266 ATTGT 85270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547018434503400