Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25428 96.9 4e-15 seq8970 95.1 1e-14 seq12304 84.2 2e-11 >seq25428 Length=70394 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037 |||| || || |||||||| | |||||| |||| |||||| |||||||||||| || Sbjct 13259 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCA 13318 Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097 |||| || || || ||||| ||| |||| || |||||||| ||| | || | |||| Sbjct 13319 TGTAGGGCGTCCCCGTCTCCGTCTGAGACTCGATGATGGCGTACCACAGCTGCTGGGCCT 13378 Query 81098 TGACCACCTTGCG 81110 | ||||| ||||| Sbjct 13379 TCACCACTTTGCG 13391 >seq8970 Length=181473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || |||||||| || || || |||||||| ||| || | Sbjct 140839 AATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 140780 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| |||| | ||||| ||||||||||||||||| || Sbjct 140779 TGACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 140735 >seq12304 Length=164263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| ||| | |||||||||||||| || ||||| | | ||| || |||| Sbjct 85270 ACAATTGTAAACTTGGCTCAGAACTTTGTAGGAAGTAATAATGTCAGCTTGCTACAGCCT 85211 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| || |||||||||||||| || | ||||||||| Sbjct 85210 ATTGGTCAGTTTGGTACTAGGCTTCATGGCGGCAAGGATGCTGCAAGTCCTCGTTACATC 85151 Query 32245 TTCACC 32250 |||||| Sbjct 85150 TTCACC 85145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570104496558960