Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25602 107 2e-18 >seq25602 Length=68118 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||| || ||||| ||||| || ||||| | |||||||| || ||| | ||| Sbjct 8850 GATCTCTCTGCAATGGCTCTCCCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAAT 8909 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| || || || ||| | ||||| || || ||||||||||| | || || |||||| Sbjct 8910 GGGGAACTCTCTTGTCAGTTATATCAGCGTTCTGGAGACATGGGACTGGGTGTACCGTTC 8969 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||||| |||||||| | || || || | ||||| || ||||| Sbjct 8970 AACATAGCTAGTTATTCACTTCTTACTTCAATGATTGCCCATGT 9013 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| | || || || | |||||||| ||||||||||| || || | Sbjct 9013 ACATGGGCAATCATTGAAGTAAGAAGTGAATAACTAGCTATGTTGAACGGTACACCCAGT 8954 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||||| || || ||||| | ||| || || || |||||||| | ||| || Sbjct 8953 CCCATGTCTCCAGAACGCTGATATAACTGACAAGAGAGTTCCCCATTTAAAATGTAAAAC 8894 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| | ||||| || ||||| ||||| || |||||| Sbjct 8893 TGGCAGAGAGCATGGCATGGAGGGAGAGCCATTGCAGAGAGATC 8850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448100560463760