Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq27101 105 2e-17 >seq27101 Length=56424 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| |||||||| || || ||||| || | || |||||||| ||||| |||||||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||||||||| ||| ||| || |||||||| || ||||| || | ||||| Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || ||||| || || | || | |||||||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 14485 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||||||||| ||||| |||| ||||| || | | || | |||||| Sbjct 16186 AGAACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 16127 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || | || |||||||| ||||| |||||||| || Sbjct 16126 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATC 16068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192089887804802