Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq10558 122 7e-23 seq5028 111 1e-19 >seq10558 Length=413728 Score = 122 bits (134), Expect = 7e-23 Identities = 110/137 (80%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 |||| || |||| | ||||| |||||||| || |||||||| || | ||||||||||| Sbjct 114613 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAG 114555 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||||| || || ||||||||||| | ||||| || ||||||||||| || ||||| || Sbjct 114554 ACCTCGTTTCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 114495 Query 4679 GGCGGCAAACGCTACTA 4695 || ||||| ||||||| Sbjct 114494 TGCAGCAAATGCTACTA 114478 >seq5028 Length=21598 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| || || || || | || |||||||| |||||||| | Sbjct 4570 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 4511 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| || ||||| | ||||| ||||| || ||||| || || ||||||| Sbjct 4510 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 4451 Query 4690 CTAC 4693 | || Sbjct 4450 CAAC 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426899273603039