Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10558 107 3e-18 seq5028 102 1e-16 >seq10558 Length=413728 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||| | || |||||||| || || || |||||||| || || || || Sbjct 114601 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCTTT 114542 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 114541 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 114482 Query 46774 AC 46775 || Sbjct 114481 AC 114480 Score = 96.9 bits (106), Expect = 5e-15 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| || || |||| |||| || ||||||| | | |||||| || ||||| Sbjct 116786 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 116727 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 |||| ||||| |||||||| || || || || || ||||||||||||| || ||||| | Sbjct 116726 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATATTCT 116667 Query 46400 CCATAAAATCAAACGGATT 46418 ||||||| ||||| ||||| Sbjct 116666 CCATAAAGTCAAATGGATT 116648 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||| |||||||||||||||||||||||||| || ||||| | ||| || ||| | Sbjct 105910 ACCTCTTCCGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 105851 Query 47188 TATTGGATCGGAAAAATAACAAA 47210 ||||| || |||||||| ||||| Sbjct 105850 TATTGAATAGGAAAAATGACAAA 105828 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| || ||||| || | | |||||||||||||||||||||||| || || || Sbjct 112718 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 112659 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || | ||||| ||| Sbjct 112658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 112613 >seq5028 Length=21598 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||||| | ||| || || || || || || ||||||| || | ||| | Sbjct 4570 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 4511 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 ||||||||||||| || || |||| ||||| ||||| || ||||| ||||| || || | Sbjct 4510 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 4451 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 4450 CAACCACTCTTTCACC 4435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712677003946560