Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq25442 107 4e-18 seq27101 91.5 3e-13 >seq25442 Length=71287 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || || || || ||||| || ||||||||||| || | | ||| | |||||||| || Sbjct 26949 AGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGC 26890 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||| || || ||||| |||||||||||||| | | || |||||||| || || || Sbjct 26889 TGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATC 26830 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || ||||| |||| | | |||| ||| || || || || || ||||| || Sbjct 26829 TTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCA 26770 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | |||||||| |||| ||||||||| Sbjct 26769 GTCAAGGTCTTCACAAAGATCTGCATTTT 26741 >seq27101 Length=56424 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| |||||||| ||||| |||||||| ||||||||||| || | | || Sbjct 16195 CTCAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTG 16136 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || |||||||| |||||||||||||| | | || ||| Sbjct 16135 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCT 16076 Query 152004 TCCTTTTC 152011 ||||| || Sbjct 16075 TCCTTATC 16068 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| |||||||||||||| | | || |||||||| ||||| || || Sbjct 14630 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCTTGGATCTTA 14571 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| || || ||||| || || || || || Sbjct 14570 GCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTC 14511 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||| |||| ||||||||| Sbjct 14510 AAGGTCTTCACAAAGATCTGCATTTT 14485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153393813108493