Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10558 116 4e-21 seq5028 89.7 5e-13 >seq10558 Length=413728 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| |||||||||| ||||||||||| || | ||| ||||||| |||||||| || Sbjct 114601 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCTTT 114542 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||||| ||||| || || |||||||| || || ||||| || ||||| || Sbjct 114541 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 114482 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 114481 ACTATACGT 114473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCC 23214 ||||| |||||| |||| ||||||||| || |||| | ||| ||| |||||| Sbjct 116787 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC---AGGACTTGACATCACACCC 116731 Query 23215 ATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 || |||||||||| || ||||| |||| || || || || || || || | || ||| Sbjct 116730 ATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATA 116671 Query 23275 TTTTCCATAAAATCAAATGGATT 23297 || |||||||| ||||||||||| Sbjct 116670 TTCTCCATAAAGTCAAATGGATT 116648 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | || || |||||||| ||||||||||||||||| |||||||| || Sbjct 112727 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 112668 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 112667 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 112629 >seq5028 Length=21598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || ||||| | |||||| || || || | ||||||||||| |||| || | Sbjct 4570 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 4511 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| || ||||| | || || ||||| || || || ||||| ||||| | Sbjct 4510 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 4451 Query 23651 CCAC 23654 | || Sbjct 4450 CAAC 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521299723276200