Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq21173 147 3e-30 seq28653 140 5e-28 >seq21173 Length=136489 Score = 147 bits (162), Expect = 3e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| ||||||||| ||||| || | | |||| | || ||||| | | Sbjct 112486 GGACACCGCTTGACGTTCAGGCAGACCAGTTTTTCCAAGCTTGCCGTGTTCACGATTCGG 112545 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || | | ||||| || ||||||||||||||||| | |||||||||||| |||| Sbjct 112546 AAGCCGGTGGCACCGCCAAAAGTGCTGGGCTTCCAGTATTCGGGGGAGCAGATGGGGTTC 112605 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||| || || | |||||| |||||||||| ||| | |||||||| || |||||| Sbjct 112606 CCCAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCTATCATGCTCTCTCCAAAGATG 112665 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 |||||| || ||| |||||||| | |||| | | | ||||| ||| || | |||| Sbjct 112666 CTGTTGGGGTAGGTCTTCTCCACCAACAGGCCGGGGAAGAACTCCAGAGCATCAATGTCT 112725 Query 8543 CCGTAAAGGGC 8553 || || || || Sbjct 112726 CCATACAGCGC 112736 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || || || | |||||||||||| ||||||||| ||| || ||||| |||||||| Sbjct 116323 ATCAGCCGGGCGGTCTGGAACAGCTGCTCGTCATCCCAGGTGGGGTGTTCCTGTTTCAGG 116382 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||| ||||||| || || ||||||| ||| || || Sbjct 116383 AGGTCACAGACCCGATTGTGTTCCCGCAGCCAGAGGGTTGCATACATCAGGAGGCCTGGG 116442 Query 9364 ACCAGGCCAAAAGCCTCTTGACC 9386 | || || || | ||||| || Sbjct 116443 AGAAGACCGAAGACTTCTTGGCC 116465 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9085 TGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTA 9144 |||||||| |||| | ||| ||||| | || || || |||||||||||| | Sbjct 115382 TGCCAGTGGTACAGCTGGTTGAACTCCAGAGCAATGCGGTTCTGGTACTGGAACTGGGCC 115441 Query 9145 CCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCGCTGAGCTGCTGAACG 9204 ||||| || || || |||| ||||| ||||| | |||||||||||||| ||||| ||| Sbjct 115442 CCAAAAAGAAGCTCAGGCTCAAACATCAGCTTCAGGTGGTAGCCGCTGAGATGCTGGACG 115501 Query 9205 TATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || | | | || ||| ||||| || || || Sbjct 115502 TAGTCCTCAATGACAATTTTGATCGTCTCGCC 115533 >seq28653 Length=47310 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| || ||| | || ||| ||||||||| |||||| || ||||| | || ||| Sbjct 2130 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGAACGGCACAGACC 2071 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 2070 CGATTATGTTCCCGGAGCCACAATGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 2011 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || || || || || | ||| ||||||||||| | | Sbjct 2010 ACCTCCTGTCCTACAGAAAATTTCAGGTGATCAGGGACGTGGGGTGGATAGATCATTTCC 1951 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| ||||| || | || ||||||||||| || ||||||||||| Sbjct 1950 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 1901 Score = 118 bits (130), Expect = 2e-21 Identities = 172/238 (72%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCT-CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGA 8409 || ||||| | || ||||| ||| || || || || || ||||||||||| | || || Sbjct 5308 TTCACGATGTCAAAGCCCAC-TCTACCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGA 5250 Query 8410 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCT 8469 ||||||||| || |||| || ||||| | |||||| |||||||| | || | ||| | Sbjct 5249 GCAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGT 5190 Query 8470 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCA 8528 |||||| |||||||| ||||| ||||||| || |||||| | | ||| | |||| Sbjct 5189 CTCACCAAAGATGGCTCCAGGACGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCA 5131 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || | ||||| || || | ||||| ||||| || || || || ||||| Sbjct 5130 TAGCATCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTCTCACCTGT 5073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| |||| ||||| ||||| | || ||| | ||| ||| | || Sbjct 967 CTTACCCCATGCCCCAAACCTTTTGTGAAACCTGGTCCTTTCTGAGTATCTGTCTTGAAG 908 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 907 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 848 Query 9770 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799 ||| |||| | |||| || |||| ||||| Sbjct 847 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716617980592320