Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25442 136 1e-26 >seq25442 Length=71287 Score = 136 bits (150), Expect = 1e-26 Identities = 160/214 (75%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || ||||| |||||||| |||||||| Sbjct 26741 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGGAAAACCATCACCCTAGAGGTGGA- 26796 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||||||||| ||||| ||||| || ||||| || |||| Sbjct 26797 -GCCCAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTC 26855 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| || || |||||||| |||||||| | ||||| | | Sbjct 26856 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTG 26915 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | || ||| |||| || || || || || || || Sbjct 26916 ACTACAACATCCAGAAGGAGTCCACCCTCCACCT 26949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203285743094302