Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq84 89.7 4e-13 seq73 84.2 2e-11 >seq84 Length=3616636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||| |||||||| | || | | |||||||| ||||| |||||||| || || Sbjct 1912772 GTGACATGGGCAATCATATACGTCAGTAAGGAATAGCTGGCAATATTAAATGGAACGCCA 1912713 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | ||||| ||| ||||||| ||||||||||| ||||| || | |||| || || Sbjct 1912712 AGCCCCACATCTCCTGATCTCTGATACAGTTGGCAGGACAGTTCCCCATTTAGTACGTAG 1912653 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAA 101924 || |||| | | || || || || | |||| ||||||| |||| || Sbjct 1912652 AACTGACAGAGAGCGTGGCAGGGAGGGAGAGCCATCTTAGGAACATCTGCAA 1912601 >seq73 Length=3963364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || ||||||| |||| ||| |||| | |||| | ||| |||||||||||||| Sbjct 2734419 CTTGAGCTCTCTGCTGAGCACAATATTTATTCGGTCTTTCAGAGGTCGGTTCTTCTCAGG 2734360 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATT 4388 |||||||||||| || || | ||||| | |||| ||| Sbjct 2734359 AATTGAGAACCAGGTTCTTCTTCCCATGACAACTACATT 2734321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361157844110204