Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq94 136 3e-27 seq47 113 4e-20 >seq94 Length=3237593 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | ||| |||||||| ||||||||||| || || ||||| ||| Sbjct 38342 CAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATC 38401 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| |||| ||||||||||| ||||| || ||||| || ||||| Sbjct 38402 CTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 38461 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| || || | || | |||||| || ||| ||||| | || | || Sbjct 38462 CTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGT 38521 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || ||||| |||||||| Sbjct 38522 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | ||| || || || || |||||||| || || ||||| ||| Sbjct 38798 CAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 38857 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| | || |||||||||||||| || || ||||| |||||||| Sbjct 38858 TTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTC 38917 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| || || | ||| | |||||| || || ||||| | || | || Sbjct 38918 CTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGT 38977 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| |||| || || ||||||||||||||| || Sbjct 38978 CTTGCCAGTCAAGGTCTTGACAAAAATCTGCATGCCT 39014 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583 || |||||| |||| || |||||||| || |||||||| || | | |||| ||| | Sbjct 39254 CAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC--TGAAAGTGTGCGGCCA 39311 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| || |||||| |||| || ||||| ||||| || || || ||||||||| Sbjct 39312 TCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCCTCCTTG 39371 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || | || | |||||| || || ||||| | || | Sbjct 39372 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACCTCAAGTGTGATG 39431 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || ||||| |||||||| Sbjct 39432 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| |||| ||||| ||||| || |||||||| || || ||||| ||| Sbjct 39026 CAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATC 39085 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| ||||| |||| ||||||||||| ||||| || ||||| || ||||| Sbjct 39086 CTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTC 39145 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || || || || | || | || Sbjct 39146 CTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGT 39205 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||||||| || || ||||| ||||||||| || Sbjct 39206 CTTGCCGGTCAAGGTCTTGACAAAGATCTGCATGCCT 39242 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || || ||||| || || ||||| || Sbjct 39482 CAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTC 39541 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| |||||| |||| |||||||| || ||||| || ||||| || ||||| Sbjct 39542 TTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTC 39601 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | ||| | |||||| || || ||||| | || | || Sbjct 39602 CTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGT 39661 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| ||||| |||||||||||||| Sbjct 39662 CTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || ||||| || ||||| || || | |||| | || ||| || ||||| || | Sbjct 38586 GTGGATTCTTTCTGGATGTTATAGTC--TGATAGGGTACGGCCATCTTCCAGCTGCTTGC 38643 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | || |||| |||||||| |||||||| || || ||||| ||||| || || | Sbjct 38644 CGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTCCTGGATCTTAGCCT 38703 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | |||||| || || || || | || | || ||||| ||||| | Sbjct 38704 TGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCAGTCAGGG 38763 Query 118720 TTTTTACAAAAATCTGCATG 118739 |||| ||||||||||||||| Sbjct 38764 TTTTGACAAAAATCTGCATG 38783 >seq47 Length=5048387 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||||||| | ||| || ||||| ||||||||||| | | Sbjct 1632441 TACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGT--C 1632498 Query 118570 TCATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| || ||| || | ||| || ||||| ||||||||||||| ||||| || Sbjct 1632499 AGATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGG 1632558 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCT 118686 ||| ||||| || ||||| || || ||| || | || | |||||| | || | | Sbjct 1632559 AGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGT-T 1632617 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 1632618 CAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||||||| | ||| || ||||| ||||||||||| | | Sbjct 1632669 TACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGT--C 1632726 Query 118570 TCATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| || ||| || | ||| || ||||| ||||||||||||| ||||| || Sbjct 1632727 AGATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGG 1632786 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCT 118686 ||| ||||| || ||||| || || ||| || | || | |||||| | || | | Sbjct 1632787 AGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGT-T 1632845 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 1632846 CAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 Score = 107 bits (118), Expect = 2e-18 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTG--CGCGTA 118583 || ||||||||| | ||| || ||||| ||||||||||| | | |||||| || | Sbjct 1632229 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGT--CAGATAGTGTTCGGCCA 1632286 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || | ||| || ||||| ||||||||||||| ||||| ||||| ||||| || ||| Sbjct 1632287 TCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTG 1632346 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCAC 118702 || || || ||| || | || | |||||| | || | || || || | ||| | Sbjct 1632347 TCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGT-TCAACTTCAAGGGTAAT 1632405 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||| || || ||||| |||||||| Sbjct 1632406 GGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433718287921168