Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq135 123 5e-23 seq5 91.5 3e-13 >seq135 Length=1930211 Score = 123 bits (136), Expect = 5e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGA-TAGAATACTTGGATACGG 51943 |||||| ||| || |||| ||||||| | || ||||||| | || || |||| || | Sbjct 82889 GATAGCGTCAGCCTTGTGGTGGTACTATGTCTC-AAAGGGAGTTGAGTATATGGACACAG 82831 Query 51944 TATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATT 52003 | |||||||| | ||||| |||||||| ||||| || || || || || |||||||||| Sbjct 82830 TGTTTTTCATCTTGAGGAAGAAATTTAACCAGGTCAGCTTCCTGCATGTGTATCATCATT 82771 Query 52004 TTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | || |||||||| || | ||||| || || |||||| | || |||||||| Sbjct 82770 TCACGATGTTTACCCTGTGGTGGATTGGAATCAAATGGGTCGCAGGAGGTCA 82719 >seq5 Length=15003573 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 135755 TTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814 |||| |||||||||||| || | ||||| | ||||| || || |||||||| | Sbjct 14110726 TTGTCCGAGCCTGGGATATGAAGAGGCCACTGCTGTTCTGCCCGGCCATGAATACAGCAA 14110785 Query 135815 TGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATGGGTTTCATAG 135874 ||||||| ||||| ||||||| || || || || || | |||| | |||| || | Sbjct 14110786 TGTGGGAGCATCCCATTACAGCAACGCAGATTGAAACACTGAAATGCTTTGGTTATATTG 14110845 Query 135875 AAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGG 135917 |||| ||||| | ||| |||||||| |||||||| | ||| Sbjct 14110846 AAATCCCGTGCATTGCAAAGAAACTAGCGTGTGGAGATGAAGG 14110888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922952106688160