Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq121 111 1e-19 seq51 87.8 2e-12 >seq121 Length=2118225 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| ||||| || || | ||| || ||||| ||||| ||||||||||| |||||||| | Sbjct 638939 CTTCATCCCTGCTGATCAGCTCATTGGAAAAGGTAAGGCCTGGCATTAGCCCTCGTTTCT 638880 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||| || || || ||||| || || || ||||| || ||||| || ||||| | Sbjct 638879 TCAGCCAAAAAATGGCAGCGAATGATCCTGAGAAAAATATCCCCTCAACAGCAGCAAAAG 638820 Query 16377 CAACCAATCGCTCACC 16392 | |||| ||| || || Sbjct 638819 CTACCAGTCGGTCTCC 638804 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || || || || || | ||| ||||||||||||||||| |||||||| || ||||| Sbjct 637791 ATGTAGGTGTCGATAAGGAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATCTGG 637732 Query 16565 AAACCATAAAAGCATCTAGCTTC 16587 |||||||||||||| | ||||| Sbjct 637731 AAACCATAAAAGCAACGGGCTTC 637709 >seq51 Length=4861936 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || |||||||| || || | ||||||||| || || |||||||||||||| || || || Sbjct 4860911 ATGTAAGTATCAATAAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTGG 4860970 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||| || || | ||| |||| ||||| ||||| Sbjct 4860971 AAACCATAGAAACAGCGAGCCTCGGTGATTTGAACTTC 4861008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462389411194400