Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq199 215 4e-51 seq5 165 6e-36 seq132 105 5e-18 >seq199 Length=890228 Score = 215 bits (238), Expect = 4e-51 Identities = 622/947 (66%), Gaps = 15/947 (2%) Strand=Plus/Plus Query 107670 AGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCG 107729 || |||| ||| |||| ||||||| | ||||||| || ||||| ||||| || || Sbjct 489069 AGAAAGTACATCACGTTCTCACTGAGCAGAGAAGAGGAGGAATTCCCAATTGCTTATTCC 489128 Query 107730 ATGGTGGTCCATGAGAAGATT-GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCC 107788 ||||| ||||| | ||||| || |||||||| ||||||| ||||| | || || || Sbjct 489129 ATGGTCATCCATCA-AAGATCCGATCACTTTGAAAGGCTGCTCAGAGCCATCTACGCGCC 489187 Query 107789 TCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGT 107848 ||||| || ||||| |||||| | || || ||| | | |||||||| || || Sbjct 489188 GCAGAATATCTACTGCGTCCACATCGACAATAAATCCTCGCATGATTTCAAAGCTGCCGT 489247 Query 107849 CAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGT 107908 || | | ||||||||||||| || || | ||||| || || || || Sbjct 489248 CAGGAGTGTGGCCGCCTGCTTCCCCAACGTATTTGTCGCCAGGAAACAGGAGAATGTTGT 489307 Query 107909 TTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT--CCAG 107966 || ||||||||| |||| ||||| || ||||||||||| ||||| || ||||| |||| Sbjct 489308 CTACGCCTCCTGGGCCAGGGTGCAGGCAGACCTGAACTGCATGGAGGAATTGCTGGCCAG 489367 Query 107967 AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACC 108026 | | | || ||||| ||||| | ||| ||||| | ||||||||||| || ||| Sbjct 489368 ACACCGGAGC--TGGAAATACTTCATCAATCTCTGCGGCATGGACTTCCCCATCAAAACC 489425 Query 108027 AATGCCGAGATGGTCCTGGCCCTCAAGATG-TTGAAGGGTAAGAACAGTATGGAGTCTGA 108085 || |||||| |||| |||||| || | |||| || || || | ||| | || Sbjct 489426 AACCTCGAGATCGTCCAACAGCTCAAGCTGCTACGAGGGCAA-AATAGCCTTGAGACCGA 489484 Query 108086 GGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACT 108145 | | | || ||||| || ||||||| || | | | | || Sbjct 489485 GCAGGCCCCCAAGGCCAAACGGGTGCGGTGGAAATTCCATTTCAATATCATTAACGGGAA 489544 Query 108146 GTACCCTACCAGCAA---GATGAAGGACCCTCCCCCTGATAATTTACC--CATGTTCACA 108200 || | ||||| | ||| | | ||| | ||| ||| |||| Sbjct 489545 GTTGAAGAAGAGCAATGTTACCAAGAATCTATTGACTG--GCGTGACCAACATCTTCAGT 489602 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 || || ||||| | |||| | ||| |||||| | |||||||| | |||| | Sbjct 489603 GGCAACGCCTACATAGTGGTCAGTCGGCGCTTTGTGGAGCATGTCTTCAAGGACCCAGAG 489662 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 ||| ||| || |||| || ||||| || ||||| ||||| |||||||||| Sbjct 489663 GTGCAAGTCCTGAGGGAGTGGGCGAAGGACACGTACAGCCCTGACGAGTTCCTCTGGGCC 489722 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || || ||| | ||| || |||| ||||| | || || || | ||||||| ||| Sbjct 489723 ACACTGCAGAGGTTACCGGGGGTGCCCGGCTCCATGCCCAGGCATCGCAAGTATGACACG 489782 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || |||| | | |||||||| || |||||| | ||| ||||||||| | | Sbjct 489783 AATGATATGAAGTCGGTGGCCAGGCTGGTGAAGTGGAAATACTTTGAGGGAGATTTGGCC 489842 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 || | | || ||| || |||| |||||||| ||||| |||| || ||||| Sbjct 489843 CGTGGCAAGGCCTACCCACTGTGTGCTGGCATCCATCGTAGGGCTGTCTGTATATACGGT 489902 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || || |||||| ||||||| || ||| | | |||| |||| || |||||||||||| | Sbjct 489903 GCTGGTGACCTGAACTGGATGCTACAGCAGCCTCACTTCTTTGCTAACAAGTTTGACACA 489962 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCA 108607 | || || | | || ||| |||| | || | ||||| ||||| Sbjct 489963 AATGTAGACGCCATGGTGCTGGAGTGTCTGGACCATTACCTGCGTCA 490009 >seq5 Length=15003573 Score = 165 bits (182), Expect = 6e-36 Identities = 261/374 (70%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 ||||| ||||||| ||||| ||| |||| ||||| | || | |||||| |||| ||| Sbjct 11235739 TTCCCGATTGCCTTTTCGATTGTGATCCACGAGAACGTCGAGATGTTTGAAAGGCTACTG 11235680 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAG 107831 ||| | | || |||| |||||| | ||||| ||||||||||| ||| ||| | | Sbjct 11235679 AGAGGCATCTACACCCCCCAGAACGTGTACTGCATCCACGTGGATAGGAAATCCTCGGGA 11235620 Query 107832 ACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGT 107891 | ||| ||| ||| ||| | ||| || ||| | ||||| ||| || || | Sbjct 11235619 AAGTTCTTTCTGGCCGTCCGAGCCGTCGCTTCGTGTTTCGCTAATGTTTTCCTGACCCGC 11235560 Query 107892 AAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATG 107951 || || | || || || || || ||||| | || || || || |||||||||||| Sbjct 11235559 AAATTAGAAGATGTCGTCTACGCTTCGTGGTCTCGGGTCCAGGCGGATCTGAACTGTATG 11235500 Query 107952 GAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGAC 108011 ||||| ||||| |||| ||||| |||||||||| | |||||| ||||| | || Sbjct 11235499 GAAGATCTGCTCAAGAGTCAAGTGCAATGGAAGTACCTCCTGAATTTGTGCGGCATGGAT 11235440 Query 108012 TTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAAC 108071 ||||| || || ||||| || ||||| |||| |||| ||||| || || ||| Sbjct 11235439 TTCCCAATCAAAACCAACGCAGAGATCGTCCGAAAGCTCATCGAATTGAACGGGAAAAAC 11235380 Query 108072 AGTATGGAGTCTGA 108085 ||| |||| || || Sbjct 11235379 AGTCTGGAATCGGA 11235366 Score = 113 bits (124), Expect = 3e-20 Identities = 290/437 (66%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 108189 CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTA 108248 || |||||||| |||||||| || ||||| | || | | ||||| ||| | || Sbjct 11233806 CCAATGTTCACTGGGAATGCATACTTTGTAGTTTCAAGGGAATTTGTGAGCCATCTATTT 11233747 Query 108249 GACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA-AAGACACCTATAGCCCCGACGA 108307 || ||| || ||| | ||| |||| ||||| ||||||| ||||| || || || Sbjct 11233746 TCAAATCCTGAAATCCAGA-ACTTTATGAAATGGTCAGAAGACACTTATAGTCCGGATGA 11233688 Query 108308 ACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCC 108367 ||| ||||||| || || ||| | ||| | || |||||| |||| | | Sbjct 11233687 ACATTTCTGGGCTACTCTACAGAGAATTCCTACAGTTCCAGGCTCTTATCCTCCCAATAG 11233628 Query 108368 CAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA 108427 || ||||| || || || ||| | |||| ||| | || || || ||| |||| || Sbjct 11233627 TAAATATCATATGTCGGATATGGCATCCATTGCCCGCCTGGTGAAATGGTCATACCTTGA 11233568 Query 108428 GGG--AGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCC 108485 ||| | || | | | || || |||||| || || || |||| |||||| || Sbjct 11233567 GGGGAACATATGGGAA--GGAGCTCCTTATCCAAAATGTTCAGGAACTCATCGGCATGCA 11233510 Query 108486 ATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCA 108545 | || | || || || ||||| ||||||| | || | ||||| | || ||| Sbjct 11233509 GTATGTGTCTATGGACTTGGCGACCTTAACTGGATCTTGCAACAGCATCATTTGTTTGCA 11233450 Query 108546 AACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGT 108605 |||||||||||||| |||||||||| | || |||||| | ||||| || || | Sbjct 11233449 AACAAGTTTGACCCTGATGTGGATGATATAGCACTACAGTGCATGGAAGAATATCTGAGA 11233390 Query 108606 CATAAGGCCATCTATGG 108622 ||||| || || ||||| Sbjct 11233389 CATAAAGCAATTTATGG 11233373 >seq132 Length=2005055 Score = 105 bits (116), Expect = 5e-18 Identities = 263/396 (66%), Gaps = 14/396 (4%) Strand=Plus/Minus Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 |||||| | || ||||| || ||| || || || |||||||| || || ||||| | Sbjct 1955068 TTCCCAATAAGCAAAGAGGAAGAAGAGTTTCCTATAGCCTACTCTATAGTAATCCATCAC 1955009 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 | ||||| | |||| | | || | || | | ||||| |||||||| | |||||| Sbjct 1955008 AGAATTGACATGTTTGGAAGACTTTTAAGATCAATATATGCACCTCAGAATTTTTACTGT 1954949 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 || || || || || || | |||||| || || || |||| |||| | || Sbjct 1954948 GTTCATGTTGACAAAAAATCATCTACAACTTTCTTTGATGCAGTTAAGGGCATTGTGTCA 1954889 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGT-AAGTTG---GTCCCGGTGGTTTATGCCTCCTG 107920 || || ||| ||||| || ||||| || ||| || || |||||| || | Sbjct 1954888 TGTTTTGACAACGTCTTTATCGCCAGCCAACTTGAGAGT----GTAACTTATGCATCGTT 1954833 Query 107921 GTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAG---CTCAGTGCC 107977 ||| || || ||||| | ||||| ||| | || | ||||| || |||| | Sbjct 1954832 TAGCAGGGTACAGGCTGATGTAAACTGCATGAAGGATCTTCTCCAAAGAAACTCAA---C 1954776 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 |||||| ||||| | ||| ||||| || |||||| |||| |||||| || || Sbjct 1954775 ATGGAAATACTTGATCAATCTCTGCGGTTTGGATTTCCCCTTAAAAACCAATTTTGAAAT 1954716 Query 108038 GGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAG 108073 ||| | ||||||| ||||||||||||||||| Sbjct 1954715 GGTGGAGAACCTCAAGGCCTTGAAGGGTAAGAACAG 1954680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348178799070696