Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11]
21,204 sequences; 974,498,586 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq121 111 2e-19
seq51 102 8e-17
>seq121
Length=2118225
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287
||||| || || || || || || ||||| || | |||||||| | |||||||| ||
Sbjct 638937 TCATCCCTGCTGATCAGCTCATTGGAAAAGGTAAGGCCTGGCATTAGCCCTCGTTTCTTC 638878
Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347
| |||||| || |||||||||||||| || || ||||| |||||||| |||||||| |||
Sbjct 638877 AGCCAAAAAATGGCAGCGAATGATCCTGAGAAAAATATCCCCTCAACAGCAGCAAAAGCT 638818
Query 14348 ATTAATCGTTCTCC 14361
| | ||| |||||
Sbjct 638817 ACCAGTCGGTCTCC 638804
>seq51
Length=4861936
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| || || ||||| || || || || || || ||||||| ||||| || |
Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| ||||| || || |||||||||||||| || || || ||||| || || |||||||| |
Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400
Query 14346 C 14346
|
Sbjct 4860401 C 4860401
Score = 82.4 bits (90), Expect = 7e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| ||||||||||| | |||||||| |||||||| || || |||||||| || ||
Sbjct 4860911 ATGTAAGTATCAATAAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTGG 4860970
Query 14534 AAACCATAAAAACATCTAGCTTC 14556
|||||||| ||||| | ||| ||
Sbjct 4860971 AAACCATAGAAACAGCGAGCCTC 4860993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482217754298720
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |